SMTL ID : 2hjg.1

The crystal structure of the B. subtilis YphC GTPase in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.375, H.406 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.375, A:H.406

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 14 residues within 4Å: Chain A: N.185, V.186, G.187, K.188, S.189, S.190, K.236, N.294, K.295, D.297, A.298, S.329, A.330, L.331 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.185, A:V.186, A:G.187, A:K.188, A:S.189, A:S.190, A:S.190, A:N.294, A:K.295, A:K.295, A:A.330, A:L.331 Water bridges: A:K.188 Salt bridges: A:K.188, A:K.236, A:K.236, A:D.297 pi-Cation interactions: A:K.295 GDP.3: 13 residues within 4Å: Chain A: P.12, N.13, V.14, G.15, K.16, S.17, T.18, N.119, K.120, D.122, S.145, G.146, T.147 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.13, A:V.14, A:G.15, A:K.16, A:S.17, A:T.18, A:T.18, A:N.119, A:K.120, A:K.120, A:G.146, A:T.147, A:T.147 Salt bridges: A:K.16, A:D.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muench, S.P. et al., The essential GTPase YphC displays a major domain rearrangement associated with nucleotide binding. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-08-08

Peptides

GTP-binding protein engA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTP-binding protein engA

Related Entries With Identical Sequence