SMTL ID : 2hkf.1

Crystal structure of the Complex Fab M75- Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- PRO- GLY- GLU- GLU- ASP- LEU- PRO- GLY: Carbonic anhydrase 9(Non-covalent)

LEU-PRO-GLY-GLU-GLU-ASP-LEU-PRO-GLY.1: 17 residues within 4Å: Chain A: H.31, N.33, Y.37, K.55, S.96, F.101 Chain B: V.2, S.27, T.28, N.31, Y.32, A.33, R.50, R.52, Y.101, G.102, N.103 26 PLIP interactions: 4 interactions with chain A, 22 interactions with chain B Hydrophobic interactions: A:Y.37, A:F.101, B:Y.32, B:A.33, B:Y.101, B:Y.101 Water bridges: A:K.55, B:R.50, B:R.50, B:R.52, B:N.56, B:Y.101, B:N.103, B:H.104 Salt bridges: A:K.55, B:R.50, B:R.52, B:R.52 Hydrogen bonds: B:T.28, B:N.31, B:R.52, B:R.52, B:G.102, B:N.103, B:N.103, B:N.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kral, V. et al., Stabilization of antibody structure upon association to a human carbonic anhydrase IX epitope studied by X-ray crystallography, microcalorimetry, and molecular dynamics simulations. Proteins (2008)

Release Date

2007-11-13

Peptides

Immunoglobulin Light chain Fab fragment: A
Immunoglobulin Heavy chain Fab fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Immunoglobulin Light chain Fab fragment

Immunoglobulin Heavy chain Fab fragment

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