SMTL ID : 2hkj.1

Topoisomerase VI-B bound to radicicol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.41, R.104, G.105 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:R.104, H2O.1, H2O.2, H2O.4, H2O.7, H2O.8

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: P.308, A.343, Y.344, Q.345, G.346, H.347 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.346, A:H.347

1 x RDC: RADICICOL(Non-covalent)

RDC.3: 14 residues within 4Å: Chain A: L.38, N.41, S.42, D.44, A.45, D.75, I.78, G.79, I.80, A.88, F.89, V.111, T.169, V.171 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.44, A:A.45, A:I.78, A:I.80 Hydrogen bonds: A:L.38, A:N.41, A:G.79, A:T.169 Water bridges: A:D.75, A:G.77, A:V.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corbett, K.D. et al., Structural basis for topoisomerase VI inhibition by the anti-Hsp90 drug radicicol. Nucleic Acids Res. (2006)

Release Date

2006-08-29

Peptides

Type II DNA topoisomerase VI subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Type II DNA topoisomerase VI subunit B

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