SMTL ID : 2hkz.1

Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with L-serine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x SER: SERINE(Non-covalent)

SER.1: 8 residues within 4Å: Chain A: A.19, P.80, F.81, A.82, F.117, G.118, Y.119, K.121 8 PLIP interactions: 6 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:P.80, A:A.82, A:G.118, A:K.121, A:K.121, S.1, S.1 Water bridges: A:F.81 SER.2: 8 residues within 4Å: Chain B: A.19, P.80, F.81, A.82, F.117, G.118, Y.119, K.121 8 PLIP interactions: 2 Ligand-Ligand interactions, 6 interactions with chain B Hydrogen bonds: S.2, S.2, B:P.80, B:A.82, B:G.118, B:K.121, B:K.121 Water bridges: B:F.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hussain, T. et al., Post-transfer editing mechanism of a D-aminoacyl-tRNA deacylase-like domain in threonyl-tRNA synthetase from archaea. Embo J. (2006)

Release Date

2006-08-29

Peptides

Threonyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Threonyl-tRNA synthetase

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