SMTL ID : 2hnd.1

Crystal Structure of K101E Mutant HIV-1 Reverse Transcriptase in Complex with Nevirapine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: G.433, R.458 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.458, A:G.487 Salt bridges: A:R.458 PO4.2: 6 residues within 4Å: Chain A: G.433, A.434, E.435, N.457, R.458 Chain B: A.282 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.434, A:N.457, A:N.457 Salt bridges: A:R.458 PO4.3: 6 residues within 4Å: Chain A: M.38, K.70, F.113, Y.143, L.146, Q.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.143, A:Q.148 Salt bridges: A:K.43, A:K.70

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 1 residues within 4Å: Chain A: D.440 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.440

1 x NVP: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE(Non-covalent)

NVP.5: 14 residues within 4Å: Chain A: L.97, E.98, K.100, V.103, V.176, Y.178, Y.185, G.187, F.224, W.226, L.231, H.232, P.233, Y.315 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.97, A:V.103, A:V.176, A:Y.178, A:Y.185, A:W.226, A:Y.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138. Febs J. (2006)

Release Date

2006-09-05

Peptides

Reverse transcriptase/ribonuclease H: A
Reverse transcriptase/ribonuclease H: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

Reverse transcriptase/ribonuclease H