SMTL ID : 2hnl.1

Structure of the prostaglandin D synthase from the parasitic nematode Onchocerca volvulus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 12 residues within 4Å: Chain A: Y.32, F.33, R.38, W.63, K.67, G.73, H.74, V.75, P.76, E.87, S.88 Chain B: E.121 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:H.74 Hydrogen bonds: A:V.75, A:V.75, A:E.87, A:S.88 Water bridges: A:R.38, A:H.74, A:E.87, A:E.87, A:H.89, A:H.89, A:D.120 Salt bridges: A:R.38, A:K.67, A:H.74, A:H.89 GSH.2: 13 residues within 4Å: Chain A: E.121 Chain B: Y.32, F.33, R.38, R.60, W.63, K.67, G.73, H.74, V.75, P.76, E.87, S.88 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:H.74 Hydrogen bonds: B:W.63, B:V.75, B:V.75, B:E.87, B:E.87, B:S.88, A:E.121 Water bridges: B:R.60, B:E.87, B:H.89, B:H.89, B:D.120 Salt bridges: B:R.38, B:K.67, B:H.74, B:H.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perbandt, M. et al., Structure of the extracellular glutathione S-transferase OvGST1 from the human pathogenic parasite Onchocerca volvulus. J.Mol.Biol. (2008)

Release Date

2007-07-17

Peptides

Glutathione S-transferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase 1