SMTL ID : 2hq9.1

Crystal structure of a fad-binding protein (mll6688) from mesorhizobium loti at 1.95 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: H.72 Ligand excluded by PLIP

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 19 residues within 4Å: Chain A: Y.33, V.35, P.36, L.37, Y.38, F.49, S.50, M.51, G.53, K.54, K.55, W.114 Chain B: W.78, S.80, V.81, V.82, S.143, G.144, R.145 36 PLIP interactions: 22 interactions with chain A, 14 interactions with chain B Hydrophobic interactions: A:P.36, A:Y.38, A:W.114, B:W.78, B:W.78 Hydrogen bonds: A:Y.33, A:P.36, A:Y.38, A:F.49, A:K.54, A:K.55, A:K.55, B:S.80, B:S.80, B:V.82, B:S.143, B:R.145 Water bridges: A:F.49, A:S.50, A:S.50, A:K.54, A:K.54, A:K.54, A:K.55, A:I.56, B:D.84, B:S.143, B:G.144, B:R.145, B:R.145 Salt bridges: A:K.55, B:R.145 pi-Stacking: A:W.114, A:W.114, A:W.114 pi-Cation interactions: B:R.145 FAD.4: 20 residues within 4Å: Chain A: W.78, S.80, V.81, V.82, S.143, G.144, R.145 Chain B: V.21, Y.33, V.35, P.36, L.37, Y.38, F.49, S.50, M.51, G.53, K.54, K.55, W.114 30 PLIP interactions: 11 interactions with chain A, 19 interactions with chain B Hydrophobic interactions: A:W.78, A:W.78, B:V.21, B:P.36, B:Y.38 Hydrogen bonds: A:S.80, A:S.80, A:V.82, A:S.143, A:R.145, B:Y.33, B:P.36, B:Y.38, B:F.49, B:K.54, B:K.55, B:K.55, B:K.55 Water bridges: A:G.144, A:R.145, A:R.145, B:S.50, B:K.54, B:K.54, B:I.56 Salt bridges: A:R.145, B:K.55 pi-Stacking: B:W.114, B:W.114, B:W.114

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: R.23 Chain B: R.23 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.23, B:R.23, A:R.23, A:R.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (NP_107146.1) from MESORHIZOBIUM LOTI at 1.95 A resolution. To be published

Release Date

2006-08-29

Peptides

Mll6688 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mll6688 protein