SMTL ID : 2hqz.1

Crystal structure of L42H design intermediate for GFP metal ion reporter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: E.140 Ligands: EDO.3 No protein-ligand interaction detected (PLIP)

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: N.168, I.169, G.172, S.173, V.174 Ligands: MG.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.169, A:S.173 Water bridges: A:N.168, A:G.172 EDO.4: 6 residues within 4Å: Chain A: K.52, L.53, V.55, W.57, H.137, D.214 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.53, A:L.53, A:W.57 Water bridges: A:W.57, A:H.215 EDO.5: 4 residues within 4Å: Chain A: V.191, L.192, L.193 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.191, A:L.193 EDO.6: 3 residues within 4Å: Chain A: N.142, Y.143, N.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.143, A:Y.143 EDO.7: 1 residues within 4Å: Chain A: F.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.98 Water bridges: A:D.101 EDO.8: 9 residues within 4Å: Chain A: K.3, A.85, E.88, G.89, P.185, I.186, G.187, D.188, G.189 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.89, A:I.186, A:G.187, A:G.189 Water bridges: A:K.3, A:K.3, A:E.88, A:G.189 EDO.9: 3 residues within 4Å: Chain A: Q.78, L.192 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barondeau, D.P. et al., Iterative Structure-Based Design of a Green Fluorescent Protein Metal Ion Reporter. To be Published

Release Date

2008-04-08

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein