SMTL ID : 2hr7.1

Insulin receptor (domains 1-3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: H.21, E.22, E.24, N.25 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN-MAN.2: 15 residues within 4Å: Chain A: N.111, T.113, R.114, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229, D.250, K.283 Ligands: GOL.24, GOL.26 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.138 NAG-NAG-BMA-MAN-MAN-MAN.7: 12 residues within 4Å: Chain B: N.111, T.113, R.114, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229, D.250 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.138

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 7 residues within 4Å: Chain A: N.78, N.108, K.190, N.215, S.217, V.226 Ligands: GOL.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.78, A:N.78

2 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-FUC.4: 6 residues within 4Å: Chain A: L.233, D.234, Y.245, C.253, N.255 Ligands: SO4.19 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.245 Hydrogen bonds: A:D.234 Water bridges: A:D.234 NAG-NAG-BMA-FUC.9: 4 residues within 4Å: Chain B: R.252, V.254, N.255, F.258 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.254, B:F.258 Water bridges: B:D.234, B:R.252

4 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-FUC.5: 5 residues within 4Å: Chain A: H.313, N.337, S.365, E.391 Chain B: Q.177 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Q.177 NAG-NAG-FUC.6: 3 residues within 4Å: Chain A: R.386, N.418, T.420 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.386 NAG-NAG-FUC.10: 6 residues within 4Å: Chain B: H.313, N.337, E.363, S.365, R.389, E.391 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.11: 3 residues within 4Å: Chain B: R.386, N.418, T.420 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.8: 7 residues within 4Å: Chain B: N.108, M.110, K.190, N.215, C.216, S.217, V.226 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.12: 3 residues within 4Å: Chain A: N.15, N.16, T.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.15 NAG.13: 1 residues within 4Å: Chain A: N.397 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.397 NAG.34: 3 residues within 4Å: Chain B: H.21, E.24, N.25 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.24, B:E.24, B:N.25 Water bridges: B:N.25 NAG.35: 1 residues within 4Å: Chain B: N.397 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.397

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.14: 4 residues within 4Å: Chain A: S.85, R.86, L.87, R.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.87 Salt bridges: A:R.86, A:R.114 SO4.15: 4 residues within 4Å: Chain A: N.343, R.345, R.371, R.372 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.343 Water bridges: A:R.345 Salt bridges: A:R.345, A:R.371, A:R.372 SO4.16: 3 residues within 4Å: Chain A: I.341, K.369, R.371 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.371, A:E.394, A:E.394 Salt bridges: A:K.369, A:R.371 SO4.17: 5 residues within 4Å: Chain A: P.160, G.161, T.162, A.163, K.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.161, A:T.162, A:A.163, A:K.164 Salt bridges: A:K.164 SO4.18: 3 residues within 4Å: Chain A: E.318, K.319, T.320 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.320, A:T.320 Water bridges: A:E.318, A:T.320 Salt bridges: A:K.319 SO4.19: 3 residues within 4Å: Chain A: S.257 Ligands: NAG-NAG-BMA-FUC.4, NAG-NAG-BMA-FUC.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.257, A:S.257 SO4.36: 4 residues within 4Å: Chain B: S.85, R.86, L.87, R.114 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:R.118, A:E.120 Hydrogen bonds: B:S.85, B:L.87 Salt bridges: B:R.114 SO4.37: 3 residues within 4Å: Chain B: D.221, T.223, R.236 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.236

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.20: 12 residues within 4Å: Chain A: L.37, F.39, R.65, Y.67, F.88, F.96 Chain B: R.14, F.64, F.89, V.94, F.96 Ligands: GOL.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.67

19 x GOL: GLYCEROL(Non-functional Binders)

GOL.21: 8 residues within 4Å: Chain A: P.43, F.46, R.47, G.68, L.69, E.70, S.71, D.74 Ligand excluded by PLIP GOL.22: 4 residues within 4Å: Chain A: L.206, C.207, P.219, D.220 Ligand excluded by PLIP GOL.23: 4 residues within 4Å: Chain A: E.211, V.238, E.239, T.240 Ligand excluded by PLIP GOL.24: 2 residues within 4Å: Chain A: R.114 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.2 Ligand excluded by PLIP GOL.25: 2 residues within 4Å: Chain A: E.70, K.73 Ligand excluded by PLIP GOL.26: 5 residues within 4Å: Chain A: S.134, R.135, K.197, S.198 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.2 Ligand excluded by PLIP GOL.27: 6 residues within 4Å: Chain A: R.65, E.97, V.99, K.121, N.123 Ligands: GOL.31 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain A: N.123, L.147, N.148, K.149, D.151, N.152 Ligand excluded by PLIP GOL.29: 8 residues within 4Å: Chain A: P.222, T.223, K.224, C.225, V.226, Y.232, G.235, C.237 Ligand excluded by PLIP GOL.30: 3 residues within 4Å: Chain A: R.135, T.172, R.181 Ligand excluded by PLIP GOL.31: 4 residues within 4Å: Chain A: R.65 Chain B: R.14 Ligands: P33.20, GOL.27 Ligand excluded by PLIP GOL.32: 4 residues within 4Å: Chain A: H.429, Y.430, A.458, T.461 Ligand excluded by PLIP GOL.33: 3 residues within 4Å: Chain A: S.217 Ligands: NAG-NAG-BMA.3, NAG-NAG-BMA.3 Ligand excluded by PLIP GOL.38: 10 residues within 4Å: Chain B: P.222, T.223, K.224, C.225, V.226, C.228, Y.232, G.235, R.236, C.237 Ligand excluded by PLIP GOL.39: 5 residues within 4Å: Chain A: F.89 Chain B: N.90, R.114, G.115, S.116 Ligand excluded by PLIP GOL.40: 3 residues within 4Å: Chain B: T.320, K.369, R.371 Ligand excluded by PLIP GOL.41: 3 residues within 4Å: Chain B: S.290, G.291, C.308 Ligand excluded by PLIP GOL.42: 6 residues within 4Å: Chain A: L.87, F.88, F.89 Chain B: Y.91, D.142, H.144 Ligand excluded by PLIP GOL.43: 2 residues within 4Å: Chain B: D.404, Y.430 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lou, M. et al., The first three domains of the insulin receptor differ structurally from the insulin-like growth factor 1 receptor in the regions governing ligand specificity. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-08-15

Peptides

Insulin receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Insulin receptor