SMTL ID : 2hrg.1

Crystal Structure of Blue Laccase from Trametes trogii complexed with p-methylbenzoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 8 residues within 4Å: Chain A: R.22, Q.23, N.54, M.57, H.153, L.154, A.155, V.158 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.22 Hydrogen bonds: A:A.155

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: A.324, N.326, S.382, P.384, N.433 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.324

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: S.143, T.188 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.188, H2O.14, H2O.16, H2O.21 CA.4: 2 residues within 4Å: Chain A: A.103, S.224 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.103, A:S.224, H2O.5, H2O.7, H2O.10 CA.5: 1 residues within 4Å: Chain A: D.183 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.183, H2O.17, H2O.17

4 x CU: COPPER (II) ION(Non-covalent)

CU.6: 5 residues within 4Å: Chain A: H.394, C.450, I.452, H.455, F.460 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.394, A:C.450, A:H.455 CU.7: 5 residues within 4Å: Chain A: H.64, H.66, W.107, H.109, H.451 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.451, H2O.7 CU.8: 4 residues within 4Å: Chain A: H.64, H.66, H.397, H.399 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.397, H2O.2 CU.9: 4 residues within 4Å: Chain A: H.111, H.397, H.399, H.449 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:H.399, A:H.449, H2O.7

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 5 residues within 4Å: Chain A: V.15, S.16, P.17, F.31, L.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.16 Water bridges: A:F.31, A:F.31, A:F.31 GOL.11: 6 residues within 4Å: Chain A: A.80, H.111, L.112, S.113, F.447, L.456 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.111, A:S.113 Water bridges: A:E.457 GOL.12: 3 residues within 4Å: Chain A: P.229, Q.230, T.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.230, A:Q.230, A:T.231, A:T.231

1 x 4MA: 4-METHYLBENZOIC ACID(Non-covalent)

4MA.13: 5 residues within 4Å: Chain A: V.162, F.331, P.390, G.391, H.455 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.162, A:F.331, A:P.390, A:P.390 Salt bridges: A:H.455

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matera, I. et al., Crystal structure of the blue multicopper oxidase from the white-rot fungus Trametes trogii complexed with p-toluate. Inorg.Chim.Acta. (2008)

Release Date

2007-09-11

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase

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