SMTL ID : 2hrw.1

Crystal Structure of Phosphonopyruvate Hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 8 residues within 4Å: Chain A: H.23, L.46, S.49, M.66 Ligands: CL.2, CL.3, CL.11, CL.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.49 NA.4: 8 residues within 4Å: Chain B: H.23, L.46, S.49, M.66 Ligands: CL.5, CL.6, CL.8, CL.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.23, B:S.49 NA.7: 8 residues within 4Å: Chain C: H.23, L.46, S.49, M.66 Ligands: CL.5, CL.6, CL.8, CL.9 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.23, C:S.49 NA.10: 8 residues within 4Å: Chain D: H.23, L.46, S.49, M.66 Ligands: CL.2, CL.3, CL.11, CL.12 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.23, D:S.49

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: M.66 Chain D: M.66 Ligands: NA.1, CL.3, NA.10, CL.11, CL.12 Ligand excluded by PLIP CL.3: 9 residues within 4Å: Chain A: H.23, N.24 Chain D: H.23, N.24 Ligands: NA.1, CL.2, NA.10, CL.11, CL.12 Ligand excluded by PLIP CL.5: 7 residues within 4Å: Chain B: M.66 Chain C: M.66 Ligands: NA.4, CL.6, NA.7, CL.8, CL.9 Ligand excluded by PLIP CL.6: 9 residues within 4Å: Chain B: H.23, N.24 Chain C: H.23, N.24 Ligands: NA.4, CL.5, NA.7, CL.8, CL.9 Ligand excluded by PLIP CL.8: 7 residues within 4Å: Chain B: M.66 Chain C: M.66 Ligands: NA.4, CL.5, CL.6, NA.7, CL.9 Ligand excluded by PLIP CL.9: 9 residues within 4Å: Chain B: H.23, N.24 Chain C: H.23, N.24 Ligands: NA.4, CL.5, CL.6, NA.7, CL.8 Ligand excluded by PLIP CL.11: 7 residues within 4Å: Chain A: M.66 Chain D: M.66 Ligands: NA.1, CL.2, CL.3, NA.10, CL.12 Ligand excluded by PLIP CL.12: 9 residues within 4Å: Chain A: H.23, N.24 Chain D: H.23, N.24 Ligands: NA.1, CL.2, CL.3, NA.10, CL.11 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C.C.H. et al., Structure and Kinetics of Phosphonopyruvate Hydrolase from Voriovorax sp. Pal2: New Insight into the Divergence of Catalysis within the PEP Mutase/Isocitrate Lyase Superfamily. Biochemistry (2006)

Release Date

2006-10-03

Peptides

Phosphonopyruvate hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Phosphonopyruvate hydrolase

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