SMTL ID : 2ht1.1

The closed ring structure of the Rho transcription termination factor in complex with nucleic acid in the motor domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.51 Å

Oligo State

homo-hexamer

Ligands

6 x U- C: 5'-R(*UP*C)-3'(Non-covalent)

U-C.1: 9 residues within 4Å: Chain B: L.80, F.86, R.88, G.97, Y.102, G.129, E.130, R.131, Y.132 Protein-ligand interaction information (PLIP) not available U-C.2: 7 residues within 4Å: Chain A: L.80, F.86, A.96, G.129, E.130, R.131, Y.132 Protein-ligand interaction information (PLIP) not available U-C.6: 9 residues within 4Å: Chain D: L.80, F.86, R.88, G.97, Y.102, G.129, E.130, R.131, Y.132 Protein-ligand interaction information (PLIP) not available U-C.7: 7 residues within 4Å: Chain C: L.80, F.86, A.96, G.129, E.130, R.131, Y.132 Protein-ligand interaction information (PLIP) not available U-C.11: 9 residues within 4Å: Chain F: L.80, F.86, R.88, G.97, Y.102, G.129, E.130, R.131, Y.132 Protein-ligand interaction information (PLIP) not available U-C.12: 7 residues within 4Å: Chain E: L.80, F.86, A.96, G.129, E.130, R.131, Y.132 Protein-ligand interaction information (PLIP) not available

3 x U- C- U- C- U: 5'-R(*UP*CP*UP*CP*U)-3'(Non-covalent)

U-C-U-C-U.3: 9 residues within 4Å: Chain A: K.203, D.344, R.375 Chain B: R.171, I.343, D.344, K.358, H.366, R.369 Protein-ligand interaction information (PLIP) not available U-C-U-C-U.8: 9 residues within 4Å: Chain C: K.203, D.344, R.375 Chain D: R.171, I.343, D.344, K.358, H.366, R.369 Protein-ligand interaction information (PLIP) not available U-C-U-C-U.13: 9 residues within 4Å: Chain E: K.203, D.344, R.375 Chain F: R.171, I.343, D.344, K.358, H.366, R.369 Protein-ligand interaction information (PLIP) not available

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: K.203, A.204, G.205, K.206, T.207 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.203, A:A.204, A:G.205, A:K.206, A:T.207, A:T.207 Salt bridges: A:K.206 SO4.5: 5 residues within 4Å: Chain B: K.203, A.204, G.205, K.206, T.207 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.203, B:A.204, B:G.205, B:K.206, B:T.207, B:T.207 Salt bridges: B:K.206 SO4.9: 5 residues within 4Å: Chain C: K.203, A.204, G.205, K.206, T.207 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:K.203, C:A.204, C:G.205, C:K.206, C:T.207, C:T.207 Salt bridges: C:K.206 SO4.10: 5 residues within 4Å: Chain D: K.203, A.204, G.205, K.206, T.207 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:K.203, D:A.204, D:G.205, D:K.206, D:T.207, D:T.207 Salt bridges: D:K.206 SO4.14: 5 residues within 4Å: Chain E: K.203, A.204, G.205, K.206, T.207 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:K.203, E:A.204, E:G.205, E:K.206, E:T.207, E:T.207 Salt bridges: E:K.206 SO4.15: 5 residues within 4Å: Chain F: K.203, A.204, G.205, K.206, T.207 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:K.203, F:A.204, F:G.205, F:K.206, F:T.207, F:T.207, F:T.207 Salt bridges: F:K.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skordalakes, E. et al., Structural Insights into RNA-Dependent Ring Closure and ATPase Activation by the Rho Termination Factor. Cell(Cambridge,Mass.) (2006)

Release Date

2006-11-14

Peptides

Transcription termination factor rho: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Transcription termination factor rho