SMTL ID : 2ht5.1

N8 Neuraminidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.1: 3 residues within 4Å: Chain A: N.64, I.356, I.387 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.356, A:I.387 Hydrogen bonds: A:N.64 NDG.3: 3 residues within 4Å: Chain B: N.64, I.356, I.387 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.356, B:I.387 Hydrogen bonds: B:N.64 NDG.5: 3 residues within 4Å: Chain C: N.64, I.356, I.387 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.356, C:I.387 Hydrogen bonds: C:N.64 NDG.7: 3 residues within 4Å: Chain D: N.64, I.356, I.387 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.356, D:I.387 Hydrogen bonds: D:N.64

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.212, G.216, D.242, G.263, Y.264, G.265 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.212, A:G.216, A:D.242, A:Y.264, H2O.3 CA.4: 6 residues within 4Å: Chain B: D.212, G.216, D.242, G.263, Y.264, G.265 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.212, B:G.216, B:D.242, B:Y.264, H2O.9 CA.6: 6 residues within 4Å: Chain C: D.212, G.216, D.242, G.263, Y.264, G.265 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.212, C:G.216, C:D.242, C:Y.264, H2O.15 CA.8: 6 residues within 4Å: Chain D: D.212, G.216, D.242, G.263, Y.264, G.265 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.212, D:G.216, D:D.242, D:Y.264, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russell, R.J. et al., The structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design. Nature (2006)

Release Date

2006-09-05

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Neuraminidase

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