SMTL ID : 2htu.1

N8 neuraminidase in complex with peramivir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x BCZ: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID(Non-covalent)

BCZ.1: 16 residues within 4Å: Chain A: R.36, E.37, L.52, D.69, R.70, R.74, W.97, S.98, I.141, R.143, E.146, E.195, R.211, Y.264, R.288, Y.322 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.97, A:I.141, A:R.143, A:E.195 Hydrogen bonds: A:D.69, A:R.70, A:R.74, A:W.97 Salt bridges: A:R.36, A:E.37, A:D.69, A:E.146, A:R.211, A:R.288 BCZ.2: 16 residues within 4Å: Chain B: R.36, E.37, L.52, D.69, R.70, R.74, W.97, S.98, I.141, R.143, E.146, E.195, R.211, Y.264, R.288, Y.322 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.97, B:I.141, B:R.143, B:E.195 Hydrogen bonds: B:D.69, B:R.70, B:R.74, B:W.97 Salt bridges: B:R.36, B:E.37, B:D.69, B:E.146, B:R.211, B:R.288 BCZ.3: 16 residues within 4Å: Chain C: R.36, E.37, L.52, D.69, R.70, R.74, W.97, S.98, I.141, R.143, E.146, E.195, R.211, Y.264, R.288, Y.322 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:W.97, C:I.141, C:R.143, C:E.195 Hydrogen bonds: C:D.69, C:R.70, C:R.74, C:W.97 Salt bridges: C:R.36, C:E.37, C:D.69, C:E.146, C:R.211, C:R.288 BCZ.4: 16 residues within 4Å: Chain D: R.36, E.37, L.52, D.69, R.70, R.74, W.97, S.98, I.141, R.143, E.146, E.195, R.211, Y.264, R.288, Y.322 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:W.97, D:I.141, D:R.143, D:E.195 Hydrogen bonds: D:D.69, D:R.70, D:R.74, D:W.97 Salt bridges: D:R.36, D:E.37, D:D.69, D:E.146, D:R.211, D:R.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russell, R.J. et al., The structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design. Nature (2006)

Release Date

2006-09-05

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Neuraminidase

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