SMTL ID : 2htw.1

N4 neuraminidase in complex with DANA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-tetramer

Ligands

4 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)

DAN.1: 14 residues within 4Å: Chain A: E.38, D.70, R.71, W.98, I.142, R.144, S.166, E.196, E.197, R.212, N.214, Y.265, R.289, Y.323 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.98, A:I.142, A:R.144 Hydrogen bonds: A:E.38, A:R.71, A:R.144, A:E.147, A:E.147, A:E.197, A:R.212, A:Y.265, A:Y.323 Salt bridges: A:R.289 DAN.2: 14 residues within 4Å: Chain B: E.38, D.70, R.71, W.98, I.142, R.144, S.166, E.196, E.197, R.212, N.214, Y.265, R.289, Y.323 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.98, B:I.142, B:R.144 Hydrogen bonds: B:E.38, B:R.71, B:R.144, B:E.147, B:E.147, B:E.197, B:R.212, B:Y.265, B:Y.323 Salt bridges: B:R.289 DAN.3: 14 residues within 4Å: Chain C: E.38, D.70, R.71, W.98, I.142, R.144, S.166, E.196, E.197, R.212, N.214, Y.265, R.289, Y.323 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:W.98, C:I.142, C:R.144 Hydrogen bonds: C:E.38, C:R.71, C:R.144, C:E.147, C:E.147, C:E.197, C:R.212, C:Y.265, C:Y.323 Salt bridges: C:R.289 DAN.4: 14 residues within 4Å: Chain D: E.38, D.70, R.71, W.98, I.142, R.144, S.166, E.196, E.197, R.212, N.214, Y.265, R.289, Y.323 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:W.98, D:I.142, D:R.144 Hydrogen bonds: D:E.38, D:R.71, D:R.144, D:E.147, D:E.147, D:E.197, D:R.212, D:Y.265, D:Y.323 Salt bridges: D:R.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russell, R.J. et al., The structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design. Nature (2006)

Release Date

2006-09-05

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Neuraminidase

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