SMTL ID : 2hu2.1

CTBP/BARS in ternary complex with NAD(H) and RRTGAPPAL peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x ARG- ARG- THR- GLY- ALA- PRO- PRO- ALA- LEU: 9-mer peptide from Zinc finger protein 217(Non-covalent)

ARG-ARG-THR-GLY-ALA-PRO-PRO-ALA-LEU.1: 15 residues within 4Å: Chain A: A.167, E.172, T.173, F.225, H.226, D.228, K.250, Q.251, M.252, R.253, Q.254, G.255, F.257, R.280, R.282 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.225, A:F.225 Hydrogen bonds: A:T.173, A:H.226, A:H.226, A:D.228, A:D.228, A:K.250, A:R.253, A:Q.254, A:Q.254, A:R.282 Salt bridges: A:E.172, A:D.228 ARG-ARG-THR-GLY-ALA-PRO-PRO-ALA-LEU.4: 15 residues within 4Å: Chain B: A.167, E.172, T.173, F.225, H.226, D.228, K.250, Q.251, M.252, R.253, Q.254, G.255, F.257, R.280, R.282 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.225, B:F.225 Hydrogen bonds: B:T.173, B:H.226, B:H.226, B:K.250, B:R.253, B:Q.254, B:Q.254, B:R.282 Salt bridges: B:E.172, B:D.228

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 25 residues within 4Å: Chain A: S.97, G.98, T.125, I.177, G.178, G.180, R.181, V.182, Y.200, D.201, P.202, Y.203, H.233, C.234, G.235, N.237, N.240, T.261, A.262, R.263, D.287, V.288, H.312, A.314, W.315 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.125, A:W.315 Hydrogen bonds: A:S.97, A:R.181, A:V.182, A:N.240, A:T.261, A:A.314, A:W.315 Salt bridges: A:R.181 pi-Stacking: A:Y.203 NAD.5: 25 residues within 4Å: Chain B: S.97, G.98, T.125, I.177, G.178, G.180, R.181, V.182, Y.200, D.201, P.202, Y.203, H.233, C.234, G.235, N.237, N.240, T.261, A.262, R.263, D.287, V.288, H.312, A.314, W.315 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:T.125, B:W.315 Hydrogen bonds: B:S.97, B:R.181, B:V.182, B:N.240, B:T.261, B:D.287, B:A.314, B:W.315 Salt bridges: B:R.181 pi-Stacking: B:Y.203

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: Y.73, H.74, R.94, I.95, W.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.94, A:R.94 FMT.6: 5 residues within 4Å: Chain B: Y.73, H.74, R.94, I.95, W.315 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.74, B:R.94, B:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quinlan, K.G.R. et al., Specific Recognition of ZNF217 and Other Zinc Finger Proteins at a Surface Groove of C-Terminal Binding Proteins. Mol.Cell.Biol. (2006)

Release Date

2006-10-31

Peptides

C-terminal-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C-terminal-binding protein 1

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