SMTL ID : 2hul.1 (1 other biounit)

Crystal structure of T4 Lysozyme S44C synthetic dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.142, P.143, N.144, R.145 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.142, A:N.144, A:N.144, A:R.145 Water bridges: A:R.145, A:R.148, A:R.148, A:R.148 SO4.2: 5 residues within 4Å: Chain A: F.114, T.115, N.116, S.117, N.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.116, A:N.116, A:S.117, A:N.132, A:N.132 SO4.3: 5 residues within 4Å: Chain A: S.38, L.39, N.40 Chain B: S.36, P.37 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.39, A:N.40, A:N.40 Water bridges: A:P.37 SO4.4: 3 residues within 4Å: Chain A: R.14, L.15, K.16 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.15, A:K.16 Salt bridges: A:R.14, A:K.16 SO4.8: 4 residues within 4Å: Chain B: T.142, P.143, N.144, R.145 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.21, B:T.142, B:N.144, B:N.144, B:R.145 Water bridges: B:R.145, B:R.148, B:R.148, B:R.148 SO4.9: 5 residues within 4Å: Chain B: F.114, T.115, N.116, S.117, N.132 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.116, B:N.116, B:S.117, B:N.132, B:N.132 SO4.10: 5 residues within 4Å: Chain A: S.36, P.37 Chain B: S.38, L.39, N.40 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.39, B:N.40, B:N.40 Water bridges: B:P.37 SO4.11: 3 residues within 4Å: Chain B: R.14, L.15, K.16 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.15, B:K.16 Salt bridges: B:R.14, B:K.16

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: L.91, D.92, A.93, R.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.91, A:A.93, A:R.96, A:R.96 GOL.6: 4 residues within 4Å: Chain A: F.4, R.8, E.64, N.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.8, A:N.68 Water bridges: A:N.68 GOL.7: 6 residues within 4Å: Chain A: N.2, I.3, A.93, R.96, A.97, I.100 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.3, A:A.93, A:R.96 GOL.12: 4 residues within 4Å: Chain B: L.91, D.92, A.93, R.96 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.91, B:A.93, B:R.96, B:R.96 GOL.13: 4 residues within 4Å: Chain B: F.4, R.8, E.64, N.68 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.8, B:N.68 Water bridges: B:E.64 GOL.14: 6 residues within 4Å: Chain B: N.2, I.3, A.93, R.96, A.97, I.100 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.3, B:A.93, B:R.96 Water bridges: B:Y.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banatao, D.R. et al., An approach to crystallizing proteins by synthetic symmetrization. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-10-17

Peptides

Lysozyme: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lysozyme

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