SMTL ID : 2hur.2 (4 other biounits)

Escherichia coli nucleoside diphosphate kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.10, T.92, R.103, N.113, T.115, H.116 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.113, A:N.113 Water bridges: A:K.10, A:K.10 Salt bridges: A:K.10, A:R.103, A:H.116 SO4.2: 5 residues within 4Å: Chain B: K.10, T.92, R.103, N.113, H.116 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.113 Water bridges: B:K.10, B:K.10, B:T.92, B:T.92, B:R.103 Salt bridges: B:K.10, B:R.103, B:H.116 SO4.3: 6 residues within 4Å: Chain C: K.10, T.92, R.103, N.113, T.115, H.116 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:N.113, C:N.113 Water bridges: C:K.10, C:K.10 Salt bridges: C:K.10, C:R.103, C:H.116 SO4.4: 5 residues within 4Å: Chain D: K.10, T.92, R.103, N.113, H.116 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:N.113 Water bridges: D:K.10, D:Y.50, D:T.92, D:R.103 Salt bridges: D:K.10, D:R.103, D:H.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moynie, L. et al., The structure of the Escherichia coli nucleoside diphosphate kinase reveals a new quaternary architecture for this enzyme family. Proteins (2007)

Release Date

2007-04-10

Peptides

NUCLEOSIDE DIPHOSPHATE KINASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
E

D
F

NUCLEOSIDE DIPHOSPHATE KINASE

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