SMTL ID : 2hv8.2 (1 other biounit)

Crystal structure of GTP-bound Rab11 in complex with FIP3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

hetero-2-2-mer

Ligands

1 x 2ME: METHOXYETHANE(Non-covalent)

2ME.1: 2 residues within 4Å: Chain A: R.126, R.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.129

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.22, T.40 Ligands: GTP.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.22, A:T.40, H2O.1, H2O.1 MG.7: 3 residues within 4Å: Chain C: S.22, T.40 Ligands: GTP.10 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.22, C:T.40, H2O.14, H2O.14

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: L.67, E.68, R.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.68, A:R.69 Salt bridges: A:R.69 SO4.4: 1 residues within 4Å: Chain A: K.142 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.142 SO4.8: 3 residues within 4Å: Chain C: L.67, E.68, R.69 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.68, C:R.69 Water bridges: C:E.68 Salt bridges: C:R.69 SO4.9: 3 residues within 4Å: Chain C: Y.70, A.72, S.75 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.70, C:S.75 Water bridges: C:S.75, C:S.75, C:S.75, C:S.75

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.5: 24 residues within 4Å: Chain A: D.16, S.17, G.18, V.19, G.20, K.21, S.22, N.23, F.33, N.34, L.35, S.37, S.39, T.40, A.65, G.66, N.121, K.122, D.124, L.125, S.151, A.152, L.153 Ligands: MG.2 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:G.18, A:V.19, A:G.20, A:K.21, A:S.22, A:N.23, A:N.34, A:S.37, A:K.38, A:T.40, A:G.66, A:N.121, A:K.122, A:K.122, A:A.152, A:L.153 Water bridges: A:S.17, A:S.17, A:S.22, A:S.22, A:L.35, A:S.37, A:T.40, A:D.63 Salt bridges: A:K.21, A:K.21, A:D.124 pi-Stacking: A:F.33, A:F.33 GTP.10: 23 residues within 4Å: Chain C: S.17, G.18, V.19, G.20, K.21, S.22, N.23, F.33, N.34, L.35, S.37, S.39, T.40, A.65, G.66, N.121, K.122, D.124, L.125, S.151, A.152, L.153 Ligands: MG.7 28 PLIP interactions: 28 interactions with chain C Hydrogen bonds: C:G.18, C:V.19, C:G.20, C:K.21, C:S.22, C:N.23, C:N.34, C:S.37, C:K.38, C:T.40, C:T.40, C:G.66, C:N.121, C:K.122, C:K.122, C:A.152, C:L.153 Water bridges: C:S.17, C:S.22, C:S.22, C:S.22, C:L.35, C:S.37, C:D.63 Salt bridges: C:K.21, C:K.21, C:D.124 pi-Stacking: C:F.33

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 7 residues within 4Å: Chain A: S.39, T.40, I.41, G.42, E.44 Chain D: R.41, Y.45 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:I.41, A:G.42, D:R.41 Water bridges: A:G.42, A:V.43, A:E.44 Salt bridges: A:E.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eathiraj, S. et al., Structural Basis for Rab11-mediated Recruitment of FIP3 to Recycling Endosomes. J.Mol.Biol. (2006)

Release Date

2006-11-21

Peptides

Ras-related protein Rab-11A: AC
Rab11 family-interacting protein 3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
C

B
E

D
F

Ras-related protein Rab-11A

Rab11 family-interacting protein 3

Related Entries With Identical Sequence