SMTL ID : 2hy1.1

Crystal structure of Rv0805

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: D.23, H.25, D.65, H.211 Ligands: MN.2, PO4.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.23, A:H.25, A:D.65, A:H.211, H2O.4 FE.4: 6 residues within 4Å: Chain B: D.23, H.25, D.65, H.211 Ligands: MN.5, PO4.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.23, B:H.25, B:D.65, B:H.211, H2O.8

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 7 residues within 4Å: Chain A: D.23, D.65, N.99, H.171, H.209 Ligands: FE.1, PO4.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.65, A:H.171, A:H.209, H2O.4 MN.5: 7 residues within 4Å: Chain B: D.23, D.65, N.99, H.171, H.209 Ligands: FE.4, PO4.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.65, B:H.171, B:H.209, H2O.8

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 8 residues within 4Å: Chain A: H.25, D.65, N.99, H.100, H.209, H.211 Ligands: FE.1, MN.2 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:H.25, A:H.100, A:H.209, A:H.211 PO4.6: 8 residues within 4Å: Chain B: H.25, D.65, N.99, H.100, H.209, H.211 Ligands: FE.4, MN.5 4 PLIP interactions: 4 interactions with chain B Salt bridges: B:H.25, B:H.100, B:H.209, B:H.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shenoy, A.R. et al., Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis. J.Mol.Biol. (2007)

Release Date

2006-12-26

Peptides

Rv0805: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Rv0805