SMTL ID : 2hyp.1

Crystal structure of Rv0805 D66A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: D.23, H.25, D.65, H.211 Ligands: MN.2, CAC.7 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.23, A:H.25, A:D.65, A:H.211, H2O.3 FE.8: 6 residues within 4Å: Chain B: D.23, H.25, D.65, H.211 Ligands: MN.9, CAC.14 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.23, B:H.25, B:D.65, B:H.211, H2O.5

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 7 residues within 4Å: Chain A: D.23, D.65, N.99, H.171, H.209 Ligands: FE.1, CAC.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.65, A:H.171, A:H.209, H2O.3 MN.9: 7 residues within 4Å: Chain B: D.23, D.65, N.99, H.171, H.209 Ligands: FE.8, CAC.14 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.65, B:H.171, B:H.209, H2O.5

8 x BR: BROMIDE ION(Non-covalent)

BR.3: 3 residues within 4Å: Chain A: A.104, P.115, S.116 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: Y.257, D.259, T.260 Ligand excluded by PLIP BR.5: 2 residues within 4Å: Chain A: R.103, R.147 Ligand excluded by PLIP BR.6: 2 residues within 4Å: Chain A: R.122, V.123 Ligand excluded by PLIP BR.10: 3 residues within 4Å: Chain B: A.104, P.115, S.116 Ligand excluded by PLIP BR.11: 3 residues within 4Å: Chain B: Y.257, D.259, T.260 Ligand excluded by PLIP BR.12: 2 residues within 4Å: Chain B: R.103, R.147 Ligand excluded by PLIP BR.13: 2 residues within 4Å: Chain B: R.122, V.123 Ligand excluded by PLIP

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.7: 8 residues within 4Å: Chain A: H.25, D.65, N.99, H.100, H.209, H.211 Ligands: FE.1, MN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.99 CAC.14: 8 residues within 4Å: Chain B: H.25, D.65, N.99, H.100, H.209, H.211 Ligands: FE.8, MN.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shenoy, A.R. et al., Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis. J.Mol.Biol. (2007)

Release Date

2006-12-26

Peptides

Hypothetical protein RV0805: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypothetical protein RV0805