SMTL ID : 2i02.1

CRYSTAL STRUCTURE OF a pyridoxamine 5'-phosphate oxidase-like family protein (NPUN_R6570) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.80 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 16 residues within 4Å: Chain A: Y.24, Y.39, P.40, M.41, S.42, F.56, T.57, S.61, H.62, K.63, W.112, F.113 Chain B: Y.85, W.135, F.141, P.143 19 PLIP interactions: 16 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:P.40, A:W.112, B:Y.85, B:W.135 Hydrogen bonds: A:Y.39, A:Y.39, A:P.40, A:S.42, A:F.56, A:T.57, A:H.62, A:K.63, A:K.63, B:W.135 Water bridges: A:S.61, A:S.61 Salt bridges: A:K.63 pi-Stacking: A:W.112, A:W.112

2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.2: 7 residues within 4Å: Chain A: A.59, K.96, M.101, P.120, D.121, I.122, A.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.96, A:D.121 Water bridges: A:R.98 P33.4: 5 residues within 4Å: Chain A: Y.85, W.135, F.141 Chain B: Y.24, P.40 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain B: H.16, K.43, D.46, I.47 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of general stress protein of COG3871 (ZP_00108720.1) from Nostoc punctiforme PCC 73102 at 1.80 A resolution. To be published

Release Date

2006-08-29

Peptides

general stress protein of COG3871: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

general stress protein of COG3871