SMTL ID : 2i13.2 (1 other biounit)

Aart, a six finger zinc finger designed to recognize ANN triplets

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: A.12, A.13, A.14 Chain B: T.10 Chain C: N.92, A.95, Q.117 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.92 Water bridges: C:R.98 GOL.2: 9 residues within 4Å: Chain A: G.9, G.10, G.11 Chain B: C.13, C.14 Chain C: H.120, A.123, R.145, D.147 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.120, C:D.147 Water bridges: C:H.120, C:D.147

5 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain C: C.24, C.27, H.40, H.44 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.24, C:C.27, C:H.40, C:H.44 ZN.4: 4 residues within 4Å: Chain C: C.80, C.83, H.96, H.100 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.80, C:C.83, C:H.96, C:H.100 ZN.5: 4 residues within 4Å: Chain C: C.108, C.111, H.124, H.128 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.108, C:C.111, C:H.124, C:H.128 ZN.6: 4 residues within 4Å: Chain C: C.136, C.139, H.152, H.156 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.136, C:C.139, C:H.152, C:H.156 ZN.7: 4 residues within 4Å: Chain C: C.52, C.55, H.68, H.72 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.52, C:C.55, C:H.68, C:H.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Segal, D.J. et al., Structure of Aart, a Designed Six-finger Zinc Finger Peptide, Bound to DNA. J.Mol.Biol. (2006)

Release Date

2006-10-03

Peptides

Aart: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
B

Aart

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