- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 20 residues within 4Å:- Chain A: N.45, L.72, F.74, Y.75, N.122, E.123, S.158, T.161, A.162, Y.163, S.166, D.222, H.223
- Chain D: P.132, G.149, D.150, A.185, I.187, Y.192
- Ligands: PO4.1
12 PLIP interactions:9 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:N.122, A:E.123, A:S.158, A:T.161, A:Y.163, A:S.166, D:A.185, D:Y.192, D:Y.192
- Salt bridges: A:H.223
- pi-Stacking: A:F.74, A:Y.163
NAD.5: 20 residues within 4Å:- Chain B: N.45, L.72, F.74, Y.75, N.122, E.123, S.158, T.161, A.162, Y.163, S.166, D.222, H.223
- Chain C: P.132, G.149, D.150, A.185, I.187, Y.192
- Ligands: PO4.4
12 PLIP interactions:9 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:N.122, B:E.123, B:S.158, B:T.161, B:Y.163, B:S.166, C:A.185, C:Y.192, C:Y.192
- Salt bridges: B:H.223
- pi-Stacking: B:F.74, B:Y.163
NAD.8: 20 residues within 4Å:- Chain B: P.132, G.149, D.150, A.185, I.187, Y.192
- Chain C: N.45, L.72, F.74, Y.75, N.122, E.123, S.158, T.161, A.162, Y.163, S.166, D.222, H.223
- Ligands: PO4.7
11 PLIP interactions:2 interactions with chain B, 9 interactions with chain C- Hydrogen bonds: B:A.185, B:Y.192, C:Y.75, C:N.122, C:E.123, C:S.158, C:Y.163, C:S.166
- Salt bridges: C:H.223
- pi-Stacking: C:F.74, C:Y.163
NAD.11: 20 residues within 4Å:- Chain A: P.132, G.149, D.150, A.185, I.187, Y.192
- Chain D: N.45, L.72, F.74, Y.75, N.122, E.123, S.158, T.161, A.162, Y.163, S.166, D.222, H.223
- Ligands: PO4.10
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:Y.75, D:N.122, D:E.123, D:S.158, D:Y.163, D:S.166, A:A.185, A:Y.192
- Salt bridges: D:H.223
- pi-Stacking: D:F.74, D:Y.163
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: H.173, P.252, F.253
- Chain C: H.205
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.253
GOL.6: 4 residues within 4Å:- Chain B: H.173, P.252, F.253
- Chain D: H.205
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.253
GOL.9: 4 residues within 4Å:- Chain A: H.205
- Chain C: H.173, P.252, F.253
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.253
GOL.12: 4 residues within 4Å:- Chain B: H.205
- Chain D: H.173, P.252, F.253
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:F.253
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poncet-Montange, G. et al., NAD kinases use substrate-assisted catalysis for specific recognition of NAD. J.Biol.Chem. (2007)
- Release Date
- 2007-08-07
- Peptides
- Probable inorganic polyphosphate/ATP-NAD kinase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poncet-Montange, G. et al., NAD kinases use substrate-assisted catalysis for specific recognition of NAD. J.Biol.Chem. (2007)
- Release Date
- 2007-08-07
- Peptides
- Probable inorganic polyphosphate/ATP-NAD kinase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A