SMTL ID : 2i52.2 (3 other biounits)

Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-tetramer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: E.47 Ligands: CA.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.47, H2O.1, H2O.2, H2O.2, H2O.5 CA.2: 3 residues within 4Å: Chain A: S.66 Ligands: CA.1, CA.4 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.66, H2O.1, H2O.2, H2O.2, H2O.2 CA.3: 3 residues within 4Å: Chain C: H.31, T.34 Ligands: CA.9 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:T.34, C:T.34, H2O.1, H2O.6, H2O.14 CA.4: 2 residues within 4Å: Chain A: S.66 Ligands: CA.2 No protein-ligand interaction detected (PLIP) CA.5: 4 residues within 4Å: Chain B: H.31, T.34 Chain D: T.34 Ligands: CA.11 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.34, B:T.34, H2O.6, H2O.11, H2O.14 CA.7: 2 residues within 4Å: Chain C: E.47 Ligands: CA.8 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.47, H2O.9, H2O.10, H2O.10, H2O.13 CA.8: 3 residues within 4Å: Chain C: S.66 Ligands: CA.7, CA.10 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:S.66, H2O.9, H2O.10, H2O.10, H2O.10 CA.9: 3 residues within 4Å: Chain A: H.31, T.34 Ligands: CA.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.34, A:T.34, H2O.6, H2O.9, H2O.14 CA.10: 2 residues within 4Å: Chain C: S.66 Ligands: CA.8 No protein-ligand interaction detected (PLIP) CA.11: 4 residues within 4Å: Chain B: T.34 Chain D: H.31, T.34 Ligands: CA.5 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:T.34, D:T.34, H2O.3, H2O.6, H2O.14

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 2 residues within 4Å: Chain B: E.48, E.51 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.51 Water bridges: B:N.62, B:V.63 GOL.12: 2 residues within 4Å: Chain D: E.48, E.51 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.51, D:E.51 Water bridges: D:N.62, D:V.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Structure of hypothetical protein PTO0218 from Picrophilus torridus. To be Published

Release Date

2006-09-12

Peptides

Hypothetical protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
E

D
F

Hypothetical protein

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