SMTL ID : 2i5b.1 (2 other biounits)

The crystal structure of an ADP complex of Bacillus subtilis pyridoxal kinase provides evidence for the parralel emergence of enzyme activity during evolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: N.141, T.178, G.180, G.181, K.182, A.188, D.190, E.204, M.205, I.206, T.211, A.214, G.215, K.240, I.243, I.247 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.141, A:T.178, A:G.181, A:D.190, A:I.206, A:I.206, A:G.215, A:K.240 Salt bridges: A:K.182, A:K.182 ADP.2: 18 residues within 4Å: Chain B: N.141, T.178, G.179, G.180, G.181, K.182, A.188, D.190, E.204, M.205, I.206, T.211, A.214, G.215, F.218, K.240, I.243, I.247 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.141, B:T.178, B:G.180, B:G.181, B:D.190, B:I.206, B:I.206, B:G.215, B:K.240 Salt bridges: B:K.182, B:K.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, J.A. et al., The Crystal Structure of an ADP Complex of Bacillus subtilis Pyridoxal Kinase Provides Evidence for the Parallel Emergence of Enzyme Activity During Evolution. J.Mol.Biol. (2006)

Release Date

2006-09-19

Peptides

Phosphomethylpyrimidine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphomethylpyrimidine kinase

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