SMTL ID : 2i5e.1

Crystal Structure of a Protein of Unknown Function MM2497 from Methanosarcina mazei Go1, Probable Nucleotidyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

5 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 5 residues within 4Å: Chain A: K.122, G.125, D.171, D.173 Chain B: R.205 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.122, A:K.122, B:R.205 Water bridges: A:D.171 TRS.2: 10 residues within 4Å: Chain A: P.9, Y.10, L.54, S.55, P.56, D.72, K.74, D.75, L.76, A.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.10, A:S.55, A:K.74 TRS.6: 6 residues within 4Å: Chain A: K.122, F.166, T.170 Chain B: F.166, G.169, T.170 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.170, B:F.166, B:T.170, B:E.180 TRS.7: 5 residues within 4Å: Chain A: R.205 Chain B: K.122, G.125, D.171, D.173 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.122, B:D.171, A:G.204, A:R.205 TRS.8: 10 residues within 4Å: Chain B: P.9, Y.10, L.54, S.55, P.56, D.72, K.74, D.75, L.76, A.79 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.10, B:L.54, B:S.55, B:L.76

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: Y.163, D.164, S.165 Chain B: E.108, Y.163, D.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.163, A:D.164 Water bridges: A:H.105 PEG.4: 9 residues within 4Å: Chain A: Y.10, K.11, A.15, K.16, V.32, M.35, L.36, A.96, D.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.11, A:L.36, A:A.96 PEG.5: 7 residues within 4Å: Chain A: E.88, E.89, P.90, K.132, N.133, P.134, S.135 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.135, A:S.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a hypothetical protein MM_2497 from Methanosarcina mazei Go1. To be Published

Release Date

2006-09-26

Peptides

Hypothetical protein MM_2497: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical protein MM_2497