SMTL ID : 2i5w.1

Structure of hOGG1 crosslinked to DNA sampling a normal G adjacent to an oxoG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 4 residues within 4Å: Chain B: C.7 Chain C: C.233, L.235, V.238 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.233, C:V.238 CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain C: R.38, R.40, E.152, Q.156, T.169, Y.170, H.171 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.38, C:H.171, C:H.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerjee, A. et al., A nucleobase lesion remodels the interaction of its normal neighbor in a DNA glycosylase complex. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-10-17

Peptides

N-glycosylase/DNA lyase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

N-glycosylase/DNA lyase