SMTL ID : 2i6s.1

Complement component C2a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- FUL: beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-FUL.1: 2 residues within 4Å: Chain A: E.97, N.98 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 10 residues within 4Å: Chain A: K.9, E.215, H.216, L.218, D.219, V.220, N.232, N.236, A.237, E.241 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.9, A:D.219

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 4 residues within 4Å: Chain A: N.386, S.388, E.437, R.481 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: R.14, N.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.16 NAG.5: 3 residues within 4Å: Chain A: V.213, H.216, N.236 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.213 Hydrogen bonds: A:H.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Milder, F.J. et al., Structure of complement component c2a: implications for convertase formation and substrate binding. Structure (2006)

Release Date

2006-10-17

Peptides

Complement C2a fragment: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement C2a fragment

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