SMTL ID : 2iaj.1

Crystal Structure of K103N/Y181C Mutant HIV-1 Reverse Transcriptase (RT) in Complex with ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.110, D.185, D.186 Ligands: MN.2, ATP.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.110, A:D.185, A:D.186, H2O.1 MN.2: 5 residues within 4Å: Chain A: D.110, V.111, D.185 Ligands: MN.1, ATP.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.110, A:V.111, A:D.185 MN.3: 4 residues within 4Å: Chain A: D.443, G.444, E.478, D.498 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.443, A:E.478, A:D.498, H2O.1, H2O.6

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: K.101, K.102, N.103, Y.188 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.101, A:N.103, A:Y.188

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.5: 13 residues within 4Å: Chain A: D.110, V.111, G.112, D.113, A.114, Y.115, Q.151, M.184, D.185, D.186, K.219 Ligands: MN.1, MN.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.113, A:A.114, A:Q.151, A:Q.151, A:D.186 Salt bridges: A:K.219

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain B: V.75, D.76, F.77, R.78, N.81, G.152, W.410, I.411 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.75, B:F.77, B:N.81, B:I.411, B:I.411 Water bridges: B:T.386 GOL.7: 3 residues within 4Å: Chain B: I.31, K.32, I.135 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.32, B:K.32, B:I.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, K. et al., Crystal Structures of Clinically Relevant Lys103Asn/Tyr181Cys Double Mutant HIV-1 Reverse Transcriptase in Complexes with ATP and Non-nucleoside Inhibitor HBY 097. J.Mol.Biol. (2007)

Release Date

2006-12-19

Peptides

Reverse transcriptase/ribonuclease H (p66 RT): A
Reverse transcriptase/ribonuclease H; p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H (p66 RT)

Reverse transcriptase/ribonuclease H; p51 RT

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