SMTL ID : 2ick.1

Human isopentenyl diphophate isomerase complexed with substrate analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.46, H.57, H.94, E.152, E.154 Ligands: DMA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.46, A:H.57, A:H.94, A:E.152, A:E.154

1 x DMA: DIMETHYLALLYL DIPHOSPHATE(Non-covalent)

DMA.2: 16 residues within 4Å: Chain A: Q.19, K.42, A.59, F.60, R.76, K.80, T.82, C.92, S.93, H.94, Y.142, E.152, E.154, D.156, W.202 Ligands: MN.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.59, A:W.202 Water bridges: A:R.76, A:R.76, A:R.76, A:R.76, A:I.81, A:T.82, A:C.92, A:C.92 Salt bridges: A:K.42, A:K.42, A:R.76, A:K.80, A:K.80, A:H.94, A:H.94, A:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, W. et al., The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis. J.Mol.Biol. (2007)

Release Date

2007-03-20

Peptides

Isopentenyl-diphosphate delta isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isopentenyl-diphosphate delta isomerase

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