SMTL ID : 2idb.1

Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-hexamer

Ligands

6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 11 residues within 4Å: Chain A: T.160, W.161, I.178, R.180, V.232, H.291, T.320, T.322, P.329, C.361, S.362 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.291 1PE.3: 4 residues within 4Å: Chain B: W.459, W.467, G.468, R.469 No protein-ligand interaction detected (PLIP) 1PE.4: 2 residues within 4Å: Chain C: W.459, W.467 No protein-ligand interaction detected (PLIP) 1PE.7: 11 residues within 4Å: Chain D: T.160, W.161, I.178, R.180, V.232, H.291, T.320, T.322, P.329, C.361, S.362 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.291 1PE.9: 4 residues within 4Å: Chain E: W.459, W.467, G.468, R.469 No protein-ligand interaction detected (PLIP) 1PE.10: 2 residues within 4Å: Chain F: W.459, W.467 No protein-ligand interaction detected (PLIP)

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: W.467, G.468 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.467 Water bridges: A:W.459 EDO.5: 2 residues within 4Å: Chain C: V.232, P.329 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:P.329 EDO.6: 3 residues within 4Å: Chain C: D.403, D.404, N.406 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.404 EDO.8: 2 residues within 4Å: Chain D: W.467, G.468 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:W.467 Water bridges: D:W.459 EDO.11: 2 residues within 4Å: Chain F: V.232, P.329 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:P.329 EDO.12: 3 residues within 4Å: Chain F: D.403, D.404, N.406 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:D.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, W. et al., Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459. TO BE PUBLISHED

Release Date

2006-10-24

Peptides

3-octaprenyl-4-hydroxybenzoate carboxy-lyase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

3-octaprenyl-4-hydroxybenzoate carboxy-lyase

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