SMTL ID : 2idk.1

Crystal Structure of Rat Glycine N-Methyltransferase Complexed With Folate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-tetramer

Ligands

2 x C2F: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID(Non-covalent)

C2F.1: 13 residues within 4Å: Chain A: Y.5, R.6, T.7 Chain B: L.207, H.214, M.215, R.239 Chain C: S.3, V.4, Y.5 Chain D: L.207, H.214, M.215 10 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D, 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: C:Y.5, D:L.207, A:Y.5, A:Y.5 Hydrogen bonds: C:S.3, C:S.3, B:H.214, B:R.239, A:Y.5 Salt bridges: D:H.214 C2F.2: 12 residues within 4Å: Chain A: L.207, M.215 Chain B: S.3, V.4, Y.5 Chain C: L.207, H.214, M.215, R.239 Chain D: Y.5, R.6, T.7 12 PLIP interactions: 3 interactions with chain C, 5 interactions with chain B, 4 interactions with chain D Hydrogen bonds: C:H.214, C:R.239, C:R.239, B:S.3, B:S.3, B:S.3, D:Y.5 Hydrophobic interactions: B:Y.5, B:Y.5, D:Y.5, D:Y.5, D:Y.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luka, Z. et al., 5-methyltetrahydrofolate is bound in intersubunit areas of rat liver folate-binding protein glycine N-methyltransferase. J.Biol.Chem. (2007)

Release Date

2006-12-19

Peptides

Glycine N-methyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glycine N-methyltransferase

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