SMTL ID : 2ido.1 (1 other biounit)

Structure of the E. coli Pol III epsilon-Hot proofreading complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.12 Ligands: MN.2, TMP.3 5 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.12, H2O.1, H2O.1, H2O.4, TMP.3 MN.2: 6 residues within 4Å: Chain A: D.12, T.13, E.14, D.167 Ligands: MN.1, TMP.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.12, A:E.14, A:D.167, H2O.1

1 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.3: 14 residues within 4Å: Chain A: D.12, T.13, E.14, T.15, G.17, M.18, E.61, V.65, H.66, F.102, R.159, D.167 Ligands: MN.1, MN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.65 Hydrogen bonds: A:E.14, A:T.15, A:E.61, A:E.61, A:R.159 Water bridges: A:D.12, A:T.13, A:M.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kirby, T.W. et al., Structure of the Escherichia coli DNA polymerase III epsilon-HOT proofreading complex. J.Biol.Chem. (2006)

Release Date

2006-11-14

Peptides

DNA polymerase III epsilon subunit: A
Hot protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase III epsilon subunit

Hot protein

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