SMTL ID : 2idw.1

Crystal structure analysis of HIV-1 protease mutant V82A with a potent non-peptide inhibitor (UIC-94017)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: K.14, I.15, G.16, G.17 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:K.14, A:K.14, A:G.16, A:I.63 Salt bridges: A:K.14 PO4.3: 2 residues within 4Å: Chain A: P.39, G.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.40 Water bridges: A:G.40 PO4.4: 5 residues within 4Å: Chain A: L.19, K.20, E.21, E.34, N.83 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.19, A:E.21, A:N.83 Water bridges: A:E.21, A:E.34 PO4.9: 2 residues within 4Å: Chain B: P.1, H.69 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.1, B:P.1 Salt bridges: B:H.69

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 1 residues within 4Å: Chain A: P.1 No protein-ligand interaction detected (PLIP)

6 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 2 residues within 4Å: Chain A: M.36, S.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.37 ACY.7: 4 residues within 4Å: Chain A: M.46, F.53, I.54, K.55 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.55 Hydrogen bonds: A:K.55 Water bridges: A:F.53 Salt bridges: A:K.55 ACY.11: 3 residues within 4Å: Chain A: P.81 Chain B: G.48, G.49 No protein-ligand interaction detected (PLIP) ACY.12: 3 residues within 4Å: Chain A: W.6 Chain B: T.91, G.94 No protein-ligand interaction detected (PLIP) ACY.13: 4 residues within 4Å: Chain B: L.10, V.11, T.12, E.21 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.10, B:E.21 Hydrogen bonds: B:T.12, B:T.12 ACY.14: 2 residues within 4Å: Chain B: K.14, E.65 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.14, B:K.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain A: W.42, P.44, K.45, K.55, V.56, R.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.45, A:V.56

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.10: 23 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.30, V.32, I.47, G.48, G.49, I.50, P.81, A.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, I.84 20 PLIP interactions: 11 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:I.47, A:P.81, A:A.82, A:I.84, B:L.23, B:I.84 Hydrogen bonds: A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30 Water bridges: A:D.29, A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tie, Y. et al., High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-Peptide Inhibitor (Uic-94017) Active Against Multi-Drug-Resistant Clinical Strains. J.Mol.Biol. (2004)

Release Date

2006-10-03

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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