SMTL ID : 2ie7.1

Annexin V under 2.0 MPa pressure of nitrous oxide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

21 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: G.180, K.183, G.185, E.225 Ligands: SO4.8 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.180, A:K.183, A:G.185, A:E.225, H2O.3 CA.2: 4 residues within 4Å: Chain A: M.25, G.27, G.29, E.69 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:M.25, A:G.27, A:G.29, A:E.69, H2O.4 CA.3: 3 residues within 4Å: Chain A: D.223, T.226, E.231 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.223, A:T.226 CA.4: 4 residues within 4Å: Chain A: M.256, G.258, G.260, D.300 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.256, A:G.258, A:G.260, A:D.300, A:D.300 CA.5: 3 residues within 4Å: Chain A: K.67, L.70, E.75 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:K.67, A:L.70 CA.6: 2 residues within 4Å: Chain A: T.30, E.32 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.30, A:E.32 CA.7: 2 residues within 4Å: Chain A: G.185, T.186 No protein-ligand interaction detected (PLIP) CA.14: 5 residues within 4Å: Chain B: G.180, K.183, G.185, E.225 Ligands: SO4.21 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:G.180, B:K.183, B:G.185, B:E.225, H2O.9 CA.15: 4 residues within 4Å: Chain B: M.25, G.27, G.29, E.69 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:M.25, B:G.27, B:G.29, B:E.69, H2O.10 CA.16: 3 residues within 4Å: Chain B: D.223, T.226, E.231 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.223, B:T.226 CA.17: 4 residues within 4Å: Chain B: M.256, G.258, G.260, D.300 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:M.256, B:G.258, B:G.260, B:D.300, B:D.300 CA.18: 3 residues within 4Å: Chain B: K.67, L.70, E.75 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:K.67, B:L.70 CA.19: 2 residues within 4Å: Chain B: T.30, E.32 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.30, B:E.32 CA.20: 2 residues within 4Å: Chain B: G.185, T.186 No protein-ligand interaction detected (PLIP) CA.27: 5 residues within 4Å: Chain C: G.180, K.183, G.185, E.225 Ligands: SO4.34 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:G.180, C:K.183, C:G.185, C:E.225, H2O.14 CA.28: 4 residues within 4Å: Chain C: M.25, G.27, G.29, E.69 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:M.25, C:G.27, C:G.29, C:E.69, H2O.16 CA.29: 3 residues within 4Å: Chain C: D.223, T.226, E.231 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.223, C:T.226 CA.30: 4 residues within 4Å: Chain C: M.256, G.258, G.260, D.300 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:M.256, C:G.258, C:G.260, C:D.300, C:D.300 CA.31: 3 residues within 4Å: Chain C: K.67, L.70, E.75 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:K.67, C:L.70 CA.32: 2 residues within 4Å: Chain C: T.30, E.32 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.30, C:E.32 CA.33: 2 residues within 4Å: Chain C: G.185, T.186 No protein-ligand interaction detected (PLIP)

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 6 residues within 4Å: Chain A: K.183, W.184, G.185, T.186, E.225 Ligands: CA.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.185, A:G.185 Water bridges: A:G.185, A:E.225 SO4.9: 4 residues within 4Å: Chain A: R.22, K.26, G.27, R.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.27 Water bridges: A:R.60 Salt bridges: A:R.22, A:R.60 SO4.10: 3 residues within 4Å: Chain A: S.302, G.303, K.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.303 Salt bridges: A:K.306 SO4.11: 8 residues within 4Å: Chain A: A.112, S.113, R.114, R.158, V.200, S.240, I.241, I.244 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.240 Water bridges: A:R.158, A:R.158 Salt bridges: A:R.158 SO4.21: 6 residues within 4Å: Chain B: K.183, W.184, G.185, T.186, E.225 Ligands: CA.14 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.185, B:G.185 Water bridges: B:G.185, B:E.225 SO4.22: 4 residues within 4Å: Chain B: R.22, K.26, G.27, R.60 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.27 Water bridges: B:R.60 Salt bridges: B:R.22, B:R.60 SO4.23: 3 residues within 4Å: Chain B: S.302, G.303, K.306 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.303 Salt bridges: B:K.306 SO4.24: 8 residues within 4Å: Chain B: A.112, S.113, R.114, R.158, V.200, S.240, I.241, I.244 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.240 Water bridges: B:R.158, B:R.158 Salt bridges: B:R.158 SO4.34: 6 residues within 4Å: Chain C: K.183, W.184, G.185, T.186, E.225 Ligands: CA.27 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.185, C:G.185 Water bridges: C:G.185, C:E.225 SO4.35: 4 residues within 4Å: Chain C: R.22, K.26, G.27, R.60 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.27 Water bridges: C:R.60 Salt bridges: C:R.22, C:R.60 SO4.36: 3 residues within 4Å: Chain C: S.302, G.303, K.306 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.303 Salt bridges: C:K.306 SO4.37: 8 residues within 4Å: Chain C: A.112, S.113, R.114, R.158, V.200, S.240, I.241, I.244 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.240 Water bridges: C:R.158, C:R.158 Salt bridges: C:R.158

6 x N2O: NITROUS OXIDE(Non-covalent)

N2O.12: 5 residues within 4Å: Chain A: T.186, F.191, E.225, T.226, L.234 No protein-ligand interaction detected (PLIP) N2O.13: 7 residues within 4Å: Chain A: V.63, M.66, K.67, L.70, E.75, I.78, V.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.66 N2O.25: 5 residues within 4Å: Chain B: T.186, F.191, E.225, T.226, L.234 No protein-ligand interaction detected (PLIP) N2O.26: 7 residues within 4Å: Chain B: V.63, M.66, K.67, L.70, E.75, I.78, V.79 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.66 N2O.38: 5 residues within 4Å: Chain C: T.186, F.191, E.225, T.226, L.234 No protein-ligand interaction detected (PLIP) N2O.39: 7 residues within 4Å: Chain C: V.63, M.66, K.67, L.70, E.75, I.78, V.79 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.63, C:M.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colloc'h, N. et al., Protein Crystallography under Xenon and Nitrous Oxide Pressure: Comparison with In Vivo Pharmacology Studies and Implications for the Mechanism of Inhaled Anesthetic Action. Biophys.J. (2007)

Release Date

2007-02-06

Peptides

Annexin A5: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Annexin A5

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