SMTL ID : 2ieh.1 (1 other biounit)

Crystal structure of human kinesin Eg5 in complex with (R)-mon97, a new monastrol-based inhibitor that binds as (R)-enantiomer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.111, S.231 Ligands: ADP.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.111, H2O.1, H2O.1, H2O.1

1 x K: POTASSIUM ION(Non-covalent)

K.2: 7 residues within 4Å: Chain A: R.23, C.24, G.72, A.73, T.75 Ligands: ADP.4, PG4.6 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: P.130, R.137 Ligands: PG4.6 Ligand excluded by PLIP

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 15 residues within 4Å: Chain A: R.23, R.25, P.26, Q.105, T.106, G.107, T.108, G.109, K.110, T.111, F.112, E.117 Ligands: MG.1, K.2, PG4.6 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.23, A:Q.105, A:G.107, A:T.108, A:G.109, A:K.110, A:T.111, A:F.112, A:E.117 Water bridges: A:K.110, A:T.111, A:T.111 Salt bridges: A:K.110 pi-Stacking: A:F.112, A:F.112

1 x MOY: [(4R)-4-(3-HYDROXYPHENYL)-1,6-DIMETHYL-2-THIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL](PHENYL)METHANONE(Non-covalent)

MOY.5: 16 residues within 4Å: Chain A: E.115, G.116, E.117, R.118, W.126, D.129, A.132, P.136, L.159, Y.210, L.213, E.214, G.216, A.217, R.220, F.238 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.126, A:P.136, A:L.159, A:Y.210, A:L.213, A:A.217, A:F.238 Hydrogen bonds: A:G.116, A:E.117

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 14 residues within 4Å: Chain A: R.23, P.26, A.73, S.74, T.75, K.76, Q.77, I.78, F.112, P.130, R.137 Ligands: K.2, CL.3, ADP.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.76, A:Q.77, A:I.78, A:R.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Saez, I. et al., Structure of human Eg5 in complex with a new monastrol-based inhibitor bound in the R configuration. J.Biol.Chem. (2007)

Release Date

2007-01-23

Peptides

Kinesin-like protein KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin-like protein KIF11

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