SMTL ID : 2ieq.1

Core Structure of S2 from the Human Coronavirus NL63 Spike Glycoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: N.73, L.74, S.75, S.76, E.77 Chain C: K.33 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:N.73, A:S.76, A:E.77 Water bridges: C:K.33, C:K.33 NA.3: 6 residues within 4Å: Chain A: K.33 Chain B: N.73, L.74, S.75, S.76, E.77 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.76, B:S.76, B:E.77, A:K.33 NA.4: 6 residues within 4Å: Chain B: K.33 Chain C: N.73, L.74, S.75, S.76, E.77 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:N.73, C:S.76, C:E.77, B:K.33 Water bridges: C:N.73, C:N.73, C:S.76

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain B: F.89, V.93 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.89 Water bridges: B:F.89, B:T.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, Q. et al., Core Structure of S2 from the Human Coronavirus NL63 Spike Glycoprotein. Biochemistry (2006)

Release Date

2007-01-09

Peptides

Spike glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike glycoprotein