- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: R.243, H.248, Y.257, R.293
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain B: R.243, H.248, R.293
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain C: R.243, H.248, Y.257, R.293
Ligand excluded by PLIPCL.16: 4 residues within 4Å:- Chain D: R.243, H.248, Y.257, R.293
Ligand excluded by PLIP- 11 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: R.243, G.244, Y.255, N.298, P.299, V.301
- Chain C: N.298
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:G.244, A:G.244, A:D.294, A:P.299, C:N.298
- Water bridges: A:N.298
GOL.4: 2 residues within 4Å:- Chain A: T.284, W.285
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Water bridges: C:R.236
- Hydrogen bonds: A:T.284
GOL.8: 7 residues within 4Å:- Chain B: R.243, G.244, Y.255, N.298, P.299, V.301
- Chain D: N.298
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:G.244, B:Y.255, B:D.294, D:N.298
- Water bridges: B:N.298
GOL.9: 3 residues within 4Å:- Chain B: I.283, T.284, W.285
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain B- Water bridges: D:R.236, D:R.236, B:N.286
GOL.10: 4 residues within 4Å:- Chain B: V.43, R.54, E.136, L.138
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:V.43, B:R.54, B:R.54, B:E.136
- Water bridges: B:V.43, B:E.136
GOL.13: 3 residues within 4Å:- Chain C: I.283, T.284, W.285
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain A- Water bridges: C:T.284, C:N.286, A:R.236, A:R.236
GOL.14: 7 residues within 4Å:- Chain A: N.298
- Chain C: R.243, G.244, Y.255, N.298, P.299, V.301
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:N.298, C:G.244, C:Y.255, C:Y.255
- Water bridges: C:N.298
GOL.17: 3 residues within 4Å:- Chain D: I.283, T.284, W.285
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain B- Water bridges: D:T.284, D:N.286, B:R.236
GOL.18: 6 residues within 4Å:- Chain B: N.298
- Chain D: R.243, G.244, Y.255, N.298, P.299
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:N.298, D:G.244, D:P.245, D:Y.255
- Water bridges: D:N.298
GOL.19: 6 residues within 4Å:- Chain D: Q.182, D.183, D.184, T.284, W.285, N.286
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:D.183, D:D.184, D:N.286
- Water bridges: D:T.284
GOL.20: 5 residues within 4Å:- Chain D: S.44, Y.45, H.61, K.110, G.111
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.44, D:H.61, D:G.111
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kovaleva, E.G. et al., Crystal structures of Fe2+ dioxygenase superoxo, alkylperoxo, and bound product intermediates. Science (2007)
- Release Date
- 2007-04-24
- Peptides
- Homoprotocatechuate 2,3-dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 11 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kovaleva, E.G. et al., Crystal structures of Fe2+ dioxygenase superoxo, alkylperoxo, and bound product intermediates. Science (2007)
- Release Date
- 2007-04-24
- Peptides
- Homoprotocatechuate 2,3-dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D