SMTL ID : 2ihm.2 (1 other biounit)

Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x DC- DA- DG- DT- DA- DT: 5'-D(*CP*AP*GP*TP*AP*T)-3'(Non-covalent)

DC-DA-DG-DT-DA-DT.1: 21 residues within 4Å: Chain A: A.6, T.7, A.8, C.9, T.10, G.11 Chain B: V.107, F.108, G.109, V.110, G.111, K.113, T.114, Q.139, H.193, R.253, F.255, R.282, D.284, W.300 Ligands: NA.4 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DC- DG: 5'-D(P*GP*CP*CP*G)-3'(Non-covalent)

DG-DC-DC-DG.2: 13 residues within 4Å: Chain A: C.1, G.2, G.3, C.4 Chain B: G.38, R.39, S.42, F.43, Y.68, G.70, E.71, H.72, S.73 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain B: D.194, D.196 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.194, B:D.196, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain B: T.105, V.107, V.110 Ligands: DC-DA-DG-DT-DA-DT.1 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.107, B:G.109, B:V.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moon, A.F. et al., Structural insight into the substrate specificity of DNA Polymerase mu. Nat.Struct.Mol.Biol. (2007)

Release Date

2006-12-12

Peptides

DNA polymerase mu: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

DNA polymerase mu

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