- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 8 residues within 4Å:- Chain A: Y.271, I.410, R.414, H.415, S.436, L.495
- Chain B: H.120, Q.121
11 PLIP interactions:4 interactions with chain B, 7 interactions with chain A- Water bridges: B:Q.121, B:Q.121, B:Q.121, A:R.414
- Salt bridges: B:H.120, A:R.414, A:H.415
- Hydrogen bonds: A:Y.271, A:Y.271, A:S.436, A:S.436
SO4.3: 5 residues within 4Å:- Chain A: N.490, N.560, Y.561, D.562, F.563
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.490, A:Y.561, A:D.562, A:D.562
- Water bridges: A:T.492, A:T.492, A:E.497
- Salt bridges: A:K.513
SO4.7: 7 residues within 4Å:- Chain A: H.120, Q.121
- Chain B: Y.271, I.410, R.414, H.415, L.495
13 PLIP interactions:9 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:Y.271, B:S.436, B:S.436
- Water bridges: B:Y.251, B:R.414, B:Y.499, B:Y.499, A:Q.121, A:Q.121, A:Q.121
- Salt bridges: B:R.414, B:H.415, A:H.120
SO4.8: 5 residues within 4Å:- Chain B: N.490, N.560, Y.561, D.562, F.563
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.490, B:N.560, B:Y.561, B:D.562
- Water bridges: B:N.490, B:N.490
- Salt bridges: B:K.513
SO4.12: 8 residues within 4Å:- Chain C: Y.271, I.410, R.414, H.415, S.436, L.495
- Chain D: H.120, Q.121
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:Y.271, C:Y.271, C:S.436, C:S.436
- Water bridges: C:R.414, D:Q.121, D:Q.121
- Salt bridges: C:R.414, C:H.415, D:H.120
SO4.13: 4 residues within 4Å:- Chain C: N.490, N.560, Y.561, D.562
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.560, C:Y.561, C:D.562
- Water bridges: C:N.490, C:N.490, C:T.492
- Salt bridges: C:K.513
SO4.16: 7 residues within 4Å:- Chain C: H.120, Q.121
- Chain D: Y.271, I.410, R.414, H.415, L.495
11 PLIP interactions:8 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:Y.271, D:S.436, D:S.436
- Water bridges: D:Y.251, D:D.301, D:R.414, C:Q.121, C:Q.121
- Salt bridges: D:R.414, D:H.415, C:H.120
SO4.17: 4 residues within 4Å:- Chain D: N.490, N.560, Y.561, D.562
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:N.490, D:N.560, D:Y.561, D:D.562
- Water bridges: D:T.492, D:T.492, D:F.563
- Salt bridges: D:K.513
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.4: 26 residues within 4Å:- Chain A: I.410, G.411, F.412, F.413, S.436, S.437, F.438, G.462, D.463, G.464, G.465, N.490, T.492, N.493, G.494, L.495, I.496, Y.561
- Chain B: V.33, G.35, E.57, T.80, P.83, G.84, N.87
- Ligands: MG.1
18 PLIP interactions:3 interactions with chain B, 15 interactions with chain A- Hydrophobic interactions: B:T.80, B:P.83, A:F.438, A:I.496
- Water bridges: B:Q.121, A:D.463, A:D.463, A:F.466
- Hydrogen bonds: A:F.412, A:F.413, A:S.436, A:F.438, A:G.462, A:G.464, A:G.465, A:G.494, A:L.495
- pi-Stacking: A:F.438
TPP.9: 26 residues within 4Å:- Chain A: V.33, G.35, E.57, T.80, P.83, G.84, N.87
- Chain B: I.410, G.411, F.412, F.413, S.436, S.437, F.438, G.462, D.463, G.464, G.465, N.490, T.492, N.493, G.494, L.495, I.496, Y.561
- Ligands: MG.6
21 PLIP interactions:17 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.438, B:I.496, A:T.80, A:P.83
- Hydrogen bonds: B:F.412, B:F.413, B:S.436, B:F.438, B:G.462, B:G.464, B:G.465, B:N.490, B:G.494, B:L.495, B:Y.561
- Water bridges: B:D.463, B:F.466, B:N.490, A:E.57, A:Q.121
- pi-Stacking: B:F.438
TPP.14: 26 residues within 4Å:- Chain C: I.410, G.411, F.412, F.413, S.436, S.437, F.438, G.462, D.463, G.464, G.465, N.490, T.492, N.493, G.494, L.495, I.496, Y.561
- Chain D: V.33, G.35, E.57, T.80, P.83, G.84, N.87
- Ligands: MG.11
21 PLIP interactions:16 interactions with chain C, 5 interactions with chain D- Hydrophobic interactions: C:F.438, C:I.496, D:V.33, D:T.80, D:P.83
- Hydrogen bonds: C:F.412, C:F.413, C:S.436, C:F.438, C:G.462, C:G.464, C:G.465, C:N.490, C:G.494, C:L.495
- Water bridges: C:D.463, C:D.463, C:F.466, D:E.57, D:Q.121
- pi-Stacking: C:F.438
TPP.18: 26 residues within 4Å:- Chain C: V.33, G.35, E.57, T.80, P.83, G.84, N.87
- Chain D: I.410, G.411, F.412, F.413, S.436, S.437, F.438, G.462, D.463, G.464, G.465, N.490, T.492, N.493, G.494, L.495, I.496, Y.561
- Ligands: MG.15
20 PLIP interactions:17 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:F.438, D:I.496, C:T.80, C:P.83
- Hydrogen bonds: D:F.412, D:F.413, D:S.436, D:F.438, D:G.462, D:G.464, D:G.465, D:N.490, D:G.494, D:L.495, D:Y.561
- Water bridges: D:D.463, D:D.463, D:F.466, C:Q.121
- pi-Stacking: D:F.438
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 4 residues within 4Å:- Chain A: E.370, F.371, D.374, H.385
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.370, A:E.370
GOL.10: 4 residues within 4Å:- Chain B: E.370, F.371, D.374, H.385
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.370
- Water bridges: B:R.367
GOL.19: 5 residues within 4Å:- Chain D: E.370, F.371, D.374, Y.378, H.385
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.370, D:E.370, D:H.385
- Water bridges: D:Y.378
GOL.20: 5 residues within 4Å:- Chain B: P.191
- Chain D: A.199, V.322, D.334, V.336
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:D.334
- Water bridges: D:D.200, D:D.334, D:V.336, B:N.189, B:T.190, B:A.192
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caines, M.E. et al., Structural and mechanistic studies on N(2)-(2-carboxyethyl)arginine synthase. Biochem.Biophys.Res.Commun. (2009)
- Release Date
- 2007-09-18
- Peptides
- Carboxyethylarginine synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caines, M.E. et al., Structural and mechanistic studies on N(2)-(2-carboxyethyl)arginine synthase. Biochem.Biophys.Res.Commun. (2009)
- Release Date
- 2007-09-18
- Peptides
- Carboxyethylarginine synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D