SMTL ID : 2ilt.2 (1 other biounit)

Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) with NADP and Adamantane Sulfone Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-12-mer

Ligands

24 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 8 residues within 4Å: Chain A: H.8, H.10 Chain F: H.8, H.10 Chain L: H.8, H.10 Ligands: NI.21, NI.45 Ligand excluded by PLIP NI.2: 8 residues within 4Å: Chain A: H.2, H.4 Chain F: H.2, H.4 Chain L: H.2, H.4 Ligands: NI.22, NI.46 Ligand excluded by PLIP NI.5: 8 residues within 4Å: Chain B: H.8, H.10 Chain H: H.8, H.10 Chain I: H.8, H.10 Ligands: NI.29, NI.33 Ligand excluded by PLIP NI.6: 8 residues within 4Å: Chain B: H.2, H.4 Chain H: H.2, H.4 Chain I: H.2, H.4 Ligands: NI.30, NI.34 Ligand excluded by PLIP NI.9: 8 residues within 4Å: Chain C: H.8, H.10 Chain G: H.8, H.10 Chain K: H.8, H.10 Ligands: NI.25, NI.41 Ligand excluded by PLIP NI.10: 8 residues within 4Å: Chain C: H.2, H.4 Chain G: H.2, H.4 Chain K: H.2, H.4 Ligands: NI.26, NI.42 Ligand excluded by PLIP NI.13: 8 residues within 4Å: Chain D: H.8, H.10 Chain E: H.8, H.10 Chain J: H.8, H.10 Ligands: NI.17, NI.37 Ligand excluded by PLIP NI.14: 8 residues within 4Å: Chain D: H.2, H.4 Chain E: H.2, H.4 Chain J: H.2, H.4 Ligands: NI.18, NI.38 Ligand excluded by PLIP NI.17: 8 residues within 4Å: Chain D: H.8, H.10 Chain E: H.8, H.10 Chain J: H.8, H.10 Ligands: NI.13, NI.37 Ligand excluded by PLIP NI.18: 8 residues within 4Å: Chain D: H.2, H.4 Chain E: H.2, H.4 Chain J: H.2, H.4 Ligands: NI.14, NI.38 Ligand excluded by PLIP NI.21: 8 residues within 4Å: Chain A: H.8, H.10 Chain F: H.8, H.10 Chain L: H.8, H.10 Ligands: NI.1, NI.45 Ligand excluded by PLIP NI.22: 8 residues within 4Å: Chain A: H.2, H.4 Chain F: H.2, H.4 Chain L: H.2, H.4 Ligands: NI.2, NI.46 Ligand excluded by PLIP NI.25: 8 residues within 4Å: Chain C: H.8, H.10 Chain G: H.8, H.10 Chain K: H.8, H.10 Ligands: NI.9, NI.41 Ligand excluded by PLIP NI.26: 8 residues within 4Å: Chain C: H.2, H.4 Chain G: H.2, H.4 Chain K: H.2, H.4 Ligands: NI.10, NI.42 Ligand excluded by PLIP NI.29: 8 residues within 4Å: Chain B: H.8, H.10 Chain H: H.8, H.10 Chain I: H.8, H.10 Ligands: NI.5, NI.33 Ligand excluded by PLIP NI.30: 8 residues within 4Å: Chain B: H.2, H.4 Chain H: H.2, H.4 Chain I: H.2, H.4 Ligands: NI.6, NI.34 Ligand excluded by PLIP NI.33: 8 residues within 4Å: Chain B: H.8, H.10 Chain H: H.8, H.10 Chain I: H.8, H.10 Ligands: NI.5, NI.29 Ligand excluded by PLIP NI.34: 8 residues within 4Å: Chain B: H.2, H.4 Chain H: H.2, H.4 Chain I: H.2, H.4 Ligands: NI.6, NI.30 Ligand excluded by PLIP NI.37: 8 residues within 4Å: Chain D: H.8, H.10 Chain E: H.8, H.10 Chain J: H.8, H.10 Ligands: NI.13, NI.17 Ligand excluded by PLIP NI.38: 8 residues within 4Å: Chain D: H.2, H.4 Chain E: H.2, H.4 Chain J: H.2, H.4 Ligands: NI.14, NI.18 Ligand excluded by PLIP NI.41: 8 residues within 4Å: Chain C: H.8, H.10 Chain G: H.8, H.10 Chain K: H.8, H.10 Ligands: NI.9, NI.25 Ligand excluded by PLIP NI.42: 8 residues within 4Å: Chain C: H.2, H.4 Chain G: H.2, H.4 Chain K: H.2, H.4 Ligands: NI.10, NI.26 Ligand excluded by PLIP NI.45: 8 residues within 4Å: Chain A: H.8, H.10 Chain F: H.8, H.10 Chain L: H.8, H.10 Ligands: NI.1, NI.21 Ligand excluded by PLIP NI.46: 8 residues within 4Å: Chain A: H.2, H.4 Chain F: H.2, H.4 Chain L: H.2, H.4 Ligands: NI.2, NI.22 Ligand excluded by PLIP

12 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 28 residues within 4Å: Chain A: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.4 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:L.205 Hydrogen bonds: A:G.31, A:S.33, A:S.33, A:S.33, A:K.34, A:I.36, A:R.56, A:S.57, A:T.82, A:T.82, A:M.83, A:N.109, A:N.109, A:I.111, A:Y.173, A:K.177, A:I.208, A:T.210 Water bridges: A:G.37, A:R.56, A:R.56, A:T.112, A:T.112, A:T.212 Salt bridges: A:K.34, A:R.56 NAP.7: 28 residues within 4Å: Chain B: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.8 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:L.205 Hydrogen bonds: B:G.31, B:S.33, B:S.33, B:S.33, B:K.34, B:I.36, B:R.56, B:S.57, B:T.82, B:T.82, B:M.83, B:N.109, B:N.109, B:I.111, B:Y.173, B:K.177, B:I.208, B:T.210 Water bridges: B:G.37, B:R.56, B:R.56, B:T.112, B:T.112, B:T.212 Salt bridges: B:K.34, B:R.56 NAP.11: 28 residues within 4Å: Chain C: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.12 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:L.205 Hydrogen bonds: C:G.31, C:S.33, C:S.33, C:S.33, C:K.34, C:I.36, C:R.56, C:S.57, C:T.82, C:M.83, C:N.109, C:N.109, C:I.111, C:K.177, C:I.208, C:T.210, C:T.210, C:T.212 Water bridges: C:G.37, C:R.56, C:R.56, C:R.56 Salt bridges: C:K.34, C:R.56 NAP.15: 28 residues within 4Å: Chain D: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.16 25 PLIP interactions: 25 interactions with chain D Hydrophobic interactions: D:L.205 Hydrogen bonds: D:G.31, D:S.33, D:S.33, D:S.33, D:K.34, D:I.36, D:R.56, D:S.57, D:T.82, D:M.83, D:N.109, D:N.109, D:I.111, D:K.177, D:I.208, D:T.210, D:T.210, D:T.212 Water bridges: D:G.37, D:R.56, D:R.56, D:R.56 Salt bridges: D:K.34, D:R.56 NAP.19: 28 residues within 4Å: Chain E: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.20 25 PLIP interactions: 25 interactions with chain E Hydrophobic interactions: E:L.205 Hydrogen bonds: E:G.31, E:S.33, E:S.33, E:S.33, E:K.34, E:I.36, E:R.56, E:S.57, E:T.82, E:T.82, E:M.83, E:N.109, E:N.109, E:I.111, E:K.177, E:I.208, E:T.210 Water bridges: E:G.37, E:R.56, E:R.56, E:R.56, E:T.212 Salt bridges: E:K.34, E:R.56 NAP.23: 28 residues within 4Å: Chain F: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.24 27 PLIP interactions: 27 interactions with chain F Hydrophobic interactions: F:L.205 Hydrogen bonds: F:G.31, F:S.33, F:S.33, F:S.33, F:K.34, F:I.36, F:R.56, F:S.57, F:T.82, F:M.83, F:N.109, F:N.109, F:I.111, F:Y.173, F:K.177, F:I.208, F:T.210, F:T.210, F:T.212 Water bridges: F:G.37, F:R.56, F:R.56, F:T.112, F:T.112 Salt bridges: F:K.34, F:R.56 NAP.27: 28 residues within 4Å: Chain G: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.28 25 PLIP interactions: 25 interactions with chain G Hydrophobic interactions: G:L.205 Hydrogen bonds: G:G.31, G:S.33, G:S.33, G:S.33, G:K.34, G:I.36, G:R.56, G:S.57, G:T.82, G:T.82, G:M.83, G:N.109, G:N.109, G:I.111, G:K.177, G:I.208, G:T.210 Water bridges: G:G.37, G:R.56, G:R.56, G:R.56, G:T.212 Salt bridges: G:K.34, G:R.56 NAP.31: 28 residues within 4Å: Chain H: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.32 27 PLIP interactions: 27 interactions with chain H Hydrophobic interactions: H:L.205 Hydrogen bonds: H:G.31, H:S.33, H:S.33, H:S.33, H:K.34, H:I.36, H:R.56, H:S.57, H:T.82, H:M.83, H:N.109, H:N.109, H:I.111, H:Y.173, H:K.177, H:I.208, H:T.210, H:T.210, H:T.212 Water bridges: H:G.37, H:R.56, H:R.56, H:T.112, H:T.112 Salt bridges: H:K.34, H:R.56 NAP.35: 28 residues within 4Å: Chain I: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.36 28 PLIP interactions: 28 interactions with chain I Hydrophobic interactions: I:L.205 Hydrogen bonds: I:G.31, I:S.33, I:S.33, I:S.33, I:K.34, I:I.36, I:R.56, I:S.57, I:T.82, I:T.82, I:M.83, I:N.109, I:N.109, I:I.111, I:Y.173, I:K.177, I:I.208, I:T.210, I:T.210 Water bridges: I:G.37, I:R.56, I:R.56, I:T.112, I:T.112, I:T.212 Salt bridges: I:K.34, I:R.56 NAP.39: 28 residues within 4Å: Chain J: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.40 24 PLIP interactions: 24 interactions with chain J Hydrophobic interactions: J:L.205 Hydrogen bonds: J:G.31, J:S.33, J:S.33, J:S.33, J:K.34, J:I.36, J:R.56, J:S.57, J:T.82, J:M.83, J:N.109, J:N.109, J:I.111, J:K.177, J:I.208, J:T.210, J:T.212 Water bridges: J:G.37, J:R.56, J:R.56, J:R.56 Salt bridges: J:K.34, J:R.56 NAP.43: 28 residues within 4Å: Chain K: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.44 24 PLIP interactions: 24 interactions with chain K Hydrophobic interactions: K:L.205 Hydrogen bonds: K:G.31, K:S.33, K:S.33, K:S.33, K:K.34, K:I.36, K:R.56, K:S.57, K:T.82, K:M.83, K:N.109, K:N.109, K:I.111, K:K.177, K:I.208, K:T.210, K:T.212 Water bridges: K:G.37, K:R.56, K:R.56, K:R.56 Salt bridges: K:K.34, K:R.56 NAP.47: 28 residues within 4Å: Chain L: G.31, A.32, S.33, K.34, G.35, I.36, A.55, R.56, S.57, G.81, T.82, M.83, N.109, H.110, I.111, V.158, S.159, S.160, Y.173, K.177, L.205, G.206, L.207, I.208, T.210, T.212, A.213 Ligands: NN1.48 28 PLIP interactions: 28 interactions with chain L Hydrophobic interactions: L:L.205 Hydrogen bonds: L:G.31, L:S.33, L:S.33, L:S.33, L:K.34, L:I.36, L:R.56, L:S.57, L:T.82, L:T.82, L:M.83, L:N.109, L:N.109, L:I.111, L:Y.173, L:K.177, L:I.208, L:T.210, L:T.210 Water bridges: L:G.37, L:R.56, L:R.56, L:T.112, L:T.112, L:T.212 Salt bridges: L:K.34, L:R.56

12 x NN1: 2-(2-CHLORO-4-FLUOROPHENOXY)-2-METHYL-N-[(1R,2S,3S,5S,7S)-5-(METHYLSULFONYL)-2-ADAMANTYL]PROPANAMIDE(Non-covalent)

NN1.4: 17 residues within 4Å: Chain A: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.116, A:A.162, A:Y.167, A:Y.167, A:V.170, A:Y.173, A:Y.173, A:A.213, A:A.216, A:V.217 Hydrogen bonds: A:S.160 NN1.8: 17 residues within 4Å: Chain B: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.7 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.116, B:A.162, B:Y.167, B:Y.167, B:V.170, B:Y.173, B:Y.173, B:A.213, B:A.216, B:V.217 Hydrogen bonds: B:S.160 NN1.12: 17 residues within 4Å: Chain C: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.11 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:L.116, C:A.162, C:Y.167, C:Y.167, C:V.170, C:Y.173, C:Y.173, C:A.213, C:A.216, C:V.217 Hydrogen bonds: C:S.160, C:Y.173 NN1.16: 17 residues within 4Å: Chain D: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.15 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:L.116, D:A.162, D:Y.167, D:Y.167, D:V.170, D:Y.173, D:Y.173, D:A.213, D:A.216, D:V.217 Hydrogen bonds: D:S.160, D:Y.173 NN1.20: 17 residues within 4Å: Chain E: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.19 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:L.116, E:A.162, E:Y.167, E:Y.167, E:V.170, E:Y.173, E:Y.173, E:A.213, E:A.216, E:V.217 Hydrogen bonds: E:S.160, E:Y.173 NN1.24: 17 residues within 4Å: Chain F: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.23 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:L.116, F:A.162, F:Y.167, F:Y.167, F:V.170, F:Y.173, F:Y.173, F:A.213, F:A.216, F:V.217 Hydrogen bonds: F:S.160 NN1.28: 17 residues within 4Å: Chain G: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.27 12 PLIP interactions: 12 interactions with chain G Hydrophobic interactions: G:L.116, G:A.162, G:Y.167, G:Y.167, G:V.170, G:Y.173, G:Y.173, G:A.213, G:A.216, G:V.217 Hydrogen bonds: G:S.160, G:Y.173 NN1.32: 17 residues within 4Å: Chain H: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.31 11 PLIP interactions: 11 interactions with chain H Hydrophobic interactions: H:L.116, H:A.162, H:Y.167, H:Y.167, H:V.170, H:Y.173, H:Y.173, H:A.213, H:A.216, H:V.217 Hydrogen bonds: H:S.160 NN1.36: 17 residues within 4Å: Chain I: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.35 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:L.116, I:A.162, I:Y.167, I:Y.167, I:V.170, I:Y.173, I:Y.173, I:A.213, I:A.216, I:V.217 Hydrogen bonds: I:S.160 NN1.40: 17 residues within 4Å: Chain J: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.39 12 PLIP interactions: 12 interactions with chain J Hydrophobic interactions: J:L.116, J:A.162, J:Y.167, J:Y.167, J:V.170, J:Y.173, J:Y.173, J:A.213, J:A.216, J:V.217 Hydrogen bonds: J:S.160, J:Y.173 NN1.44: 17 residues within 4Å: Chain K: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.43 12 PLIP interactions: 12 interactions with chain K Hydrophobic interactions: K:L.116, K:A.162, K:Y.167, K:Y.167, K:V.170, K:Y.173, K:Y.173, K:A.213, K:A.216, K:V.217 Hydrogen bonds: K:S.160, K:Y.173 NN1.48: 17 residues within 4Å: Chain L: I.111, T.114, L.116, S.160, A.162, Y.167, P.168, V.170, Y.173, L.205, G.206, L.207, T.212, A.213, A.216, V.217 Ligands: NAP.47 11 PLIP interactions: 11 interactions with chain L Hydrophobic interactions: L:L.116, L:A.162, L:Y.167, L:Y.167, L:V.170, L:Y.173, L:Y.173, L:A.213, L:A.216, L:V.217 Hydrogen bonds: L:S.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorensen, B. et al., Adamantane sulfone and sulfonamide 11-beta-HSD1 Inhibitors. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-04-03

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Corticosteroid 11-beta-dehydrogenase isozyme 1

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