SMTL ID : 2ilu.1

Crystal structure of lactaldehyde dehydrogenase from E. coli: the binary complex with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: G.254, K.255, A.256, P.257, Y.409, G.410, L.411, T.412, F.432, S.455 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.255, A:L.411, A:T.412, A:S.455 Water bridges: A:R.290, A:S.407 SO4.2: 2 residues within 4Å: Chain A: S.70, R.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.70 Salt bridges: A:R.73 SO4.4: 10 residues within 4Å: Chain B: G.254, K.255, A.256, P.257, Y.409, G.410, L.411, T.412, F.432, S.455 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.255, B:L.411, B:T.412, B:S.455 Water bridges: B:R.290, B:S.407 SO4.5: 2 residues within 4Å: Chain B: S.70, R.73 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.70 Salt bridges: B:R.73 SO4.7: 10 residues within 4Å: Chain C: G.254, K.255, A.256, P.257, Y.409, G.410, L.411, T.412, F.432, S.455 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:K.255, C:L.411, C:T.412, C:S.455 Water bridges: C:R.290, C:S.407 SO4.8: 2 residues within 4Å: Chain C: S.70, R.73 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.70 Salt bridges: C:R.73 SO4.10: 10 residues within 4Å: Chain D: G.254, K.255, A.256, P.257, Y.409, G.410, L.411, T.412, F.432, S.455 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:K.255, D:L.411, D:T.412, D:S.455 Water bridges: D:R.290, D:S.407 SO4.11: 2 residues within 4Å: Chain D: S.70, R.73 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.70 Salt bridges: D:R.73

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.3: 26 residues within 4Å: Chain A: I.149, L.150, P.151, W.152, K.176, P.177, S.178, E.179, F.180, G.207, R.208, G.209, E.210, G.213, Q.214, M.227, G.229, S.230, A.233, K.236, I.237, I.329, N.330, A.333, R.336, F.385 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:L.150, A:W.152, A:K.176, A:E.179, A:E.179, A:G.207, A:G.209, A:Q.214, A:S.230, A:N.330, A:N.330, A:R.336 Salt bridges: A:K.176 pi-Cation interactions: A:R.336 NDP.6: 26 residues within 4Å: Chain B: I.149, L.150, P.151, W.152, K.176, P.177, S.178, E.179, F.180, G.207, R.208, G.209, E.210, G.213, Q.214, M.227, G.229, S.230, A.233, K.236, I.237, I.329, N.330, A.333, R.336, F.385 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:L.150, B:W.152, B:K.176, B:E.179, B:E.179, B:G.207, B:G.209, B:Q.214, B:S.230, B:N.330, B:N.330, B:R.336 Salt bridges: B:K.176 pi-Cation interactions: B:R.336 NDP.9: 26 residues within 4Å: Chain C: I.149, L.150, P.151, W.152, K.176, P.177, S.178, E.179, F.180, G.207, R.208, G.209, E.210, G.213, Q.214, M.227, G.229, S.230, A.233, K.236, I.237, I.329, N.330, A.333, R.336, F.385 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:L.150, C:W.152, C:K.176, C:E.179, C:G.207, C:G.209, C:E.210, C:Q.214, C:S.230, C:N.330, C:N.330, C:R.336 Salt bridges: C:K.176 pi-Cation interactions: C:R.336 NDP.12: 26 residues within 4Å: Chain D: I.149, L.150, P.151, W.152, K.176, P.177, S.178, E.179, F.180, G.207, R.208, G.209, E.210, G.213, Q.214, M.227, G.229, S.230, A.233, K.236, I.237, I.329, N.330, A.333, R.336, F.385 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:L.150, D:W.152, D:K.176, D:E.179, D:G.207, D:G.209, D:E.210, D:Q.214, D:S.230, D:N.330, D:N.330, D:R.336 Salt bridges: D:K.176 pi-Cation interactions: D:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Di Costanzo, L. et al., Crystal structure of lactaldehyde dehydrogenase from Escherichia coli and inferences regarding substrate and cofactor specificity. J.Mol.Biol. (2007)

Release Date

2007-05-08

Peptides

Aldehyde dehydrogenase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Aldehyde dehydrogenase A

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