SMTL ID : 2ily.1

Crystal structure of poliovirus polymerase complexed with ATP and Mg2+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: L.268, N.269, S.271, V.282, G.284, G.285, P.287 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.269

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 14 residues within 4Å: Chain A: K.159, R.163, K.167, R.174, L.175, I.176, Y.234, T.235, G.236, Y.237, D.238, S.288, D.328, K.359 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.174, A:L.175, A:G.236, A:D.238, A:D.238, A:D.238, A:S.288 Water bridges: A:K.61, A:A.239 Salt bridges: A:R.163, A:K.167, A:K.167, A:K.167, A:K.359

7 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 7 residues within 4Å: Chain A: S.28, F.30, I.401, W.403, T.404, T.410, H.413 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.30 Hydrogen bonds: A:T.404 Salt bridges: A:H.413 ACY.4: 4 residues within 4Å: Chain A: D.71, K.311, D.349, Y.350 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.349 Salt bridges: A:K.311 ACY.5: 4 residues within 4Å: Chain A: K.375, M.392, E.396, L.417 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.417 Water bridges: A:K.375 Salt bridges: A:K.375 ACY.6: 2 residues within 4Å: Chain A: P.440, R.443 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.443 ACY.7: 1 residues within 4Å: Chain A: R.379 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.379 ACY.8: 1 residues within 4Å: Chain A: H.270 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.270 Salt bridges: A:H.270 ACY.9: 3 residues within 4Å: Chain A: P.222, F.378, I.388 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.A. et al., Stabilization of Poliovirus Polymerase by NTP Binding and Fingers-Thumb Interactions. J.Mol.Biol. (2007)

Release Date

2006-12-12

Peptides

Poliovirus polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poliovirus polymerase

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