SMTL ID : 2inr.1

Crystal structure of a 59 kDa fragment of topoisomerase IV subunit A (GrlA) from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: S.164, E.379, N.383 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.379, A:N.383 EDO.2: 3 residues within 4Å: Chain A: T.281, E.282, L.503 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.281, A:E.282 EDO.3: 6 residues within 4Å: Chain A: E.254, M.364, G.365, I.366, R.367, Q.368 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.365, A:R.367, A:Q.368 EDO.4: 3 residues within 4Å: Chain A: H.79, E.124, L.149 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.124 EDO.5: 5 residues within 4Å: Chain A: I.218, D.219, D.481, N.485, K.488 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.219, A:N.485 EDO.6: 3 residues within 4Å: Chain B: S.164, E.379, N.383 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.379, B:N.383 EDO.7: 3 residues within 4Å: Chain B: T.281, E.282, L.503 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.281, B:E.282 EDO.8: 6 residues within 4Å: Chain B: E.254, M.364, G.365, I.366, R.367, Q.368 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.365, B:R.367, B:Q.368 EDO.9: 3 residues within 4Å: Chain B: H.79, E.124, L.149 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.124 EDO.10: 5 residues within 4Å: Chain B: I.218, D.219, D.481, N.485, K.488 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.219, B:N.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carr, S.B. et al., Crystal structure of a 59 kDa fragment of topoisomerase IV subunit A (GrlA) from Staphylococcus aureus. To be Published

Release Date

2007-09-18

Peptides

DNA topoisomerase 4 subunit A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA topoisomerase 4 subunit A