SMTL ID : 2ipi.1 (3 other biounits)

Crystal Structure of Aclacinomycin Oxidoreductase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x AKY: METHYL (2S,4R)-2-ETHYL-2,5,7-TRIHYDROXY-6,11-DIOXO-4-{[2,3,6-TRIDEOXY-4-O-{2,6-DIDEOXY-4-O-[(2S,6S)-6-METHYL-5-OXOTETRAHYDRO-2H-PYRAN-2-YL]-ALPHA-D-LYXO-HEXOPYRANOSYL}-3-(DIMETHYLAMINO)-D-RIBO-HEXOPYRANOSYL]OXY}-1,2,3,4,6,11-HEXAHYDROTETRACENE-1-CARBOXYLATE(Non-covalent)

AKY.1: 18 residues within 4Å: Chain A: F.91, C.149, Y.163, Y.294, D.354, T.355, G.356, F.358, T.361, W.391, E.393, Y.397, W.423, S.425, T.427, W.428, Y.469 Ligands: FAD.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.91, A:Y.294, A:Y.397, A:W.423, A:Y.469 Hydrogen bonds: A:Y.163 pi-Stacking: A:F.358, A:F.358, A:W.391, A:W.391, A:W.391

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 30 residues within 4Å: Chain A: F.48, V.84, R.85, S.86, G.87, G.88, H.89, C.90, F.91, V.95, P.125, G.147, V.148, C.149, V.152, G.153, G.155, G.156, H.157, L.159, G.162, Y.163, G.216, G.217, G.220, I.221, V.222, F.466, N.468 Ligands: AKY.1 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.48, A:H.89, A:F.91, A:V.152 Hydrogen bonds: A:V.84, A:S.86, A:S.86, A:S.86, A:G.87, A:G.88, A:H.89, A:H.89, A:C.90, A:V.148, A:C.149, A:G.153, A:G.153, A:G.156, A:Y.163, A:Y.163, A:V.222, A:N.468, A:N.468 pi-Cation interactions: A:H.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sultana, A. et al., Structure determination by multiwavelength anomalous diffraction of aclacinomycin oxidoreductase: indications of multidomain pseudomerohedral twinning. Acta Crystallogr.,Sect.D (2007)

Release Date

2007-01-23

Peptides

Aclacinomycin oxidoreductase (AknOx): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aclacinomycin oxidoreductase (AknOx)

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