SMTL ID : 2irz.1

Crystal structure of human Beta-secretase complexed with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x I02: 3-{5-[(1R)-1-AMINO-1-METHYL-2-PHENYLETHYL]-1,3,4-OXADIAZOL-2-YL}-N-[(1R)-1-(4-FLUOROPHENYL)ETHYL]-5-[METHYL(METHYLSULFONYL)AMINO]BENZAMIDE(Non-covalent)

I02.1: 25 residues within 4Å: Chain A: G.31, Q.32, G.33, Y.34, L.50, D.52, G.54, Y.91, T.92, Q.93, F.128, I.130, W.135, I.138, D.248, S.249, G.250, T.251, T.252, N.253, R.255, R.327, S.345, A.355, E.359 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.50, A:Y.91, A:Q.93, A:I.130, A:W.135, A:W.135, A:I.138, A:A.355 Hydrogen bonds: A:T.92, A:Q.93, A:D.248, A:G.250, A:T.252, A:N.253, A:S.345 Water bridges: A:T.92, A:T.92, A:Q.93, A:T.251, A:T.252, A:T.252, A:R.255, A:R.255 pi-Stacking: A:F.128 Halogen bonds: A:E.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajapakse, H.A. et al., Discovery of oxadiazoyl tertiary carbinamine inhibitors of beta-secretase (BACE-1). J.Med.Chem. (2006)

Release Date

2006-11-14

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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