SMTL ID : 2is3.3 (5 other biounits)

Crystal Structure of Escherichia coli RNase T

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-32-mer

Ligands

104 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: M.173, D.174, R.189 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain B: M.173, D.174, R.189 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain B: K.101, R.104, R.140 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain B: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain B: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain A: R.15, R.114, H.144 Chain B: T.162, V.163 Chain C: M.173, D.174, R.189 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain C: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain C: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain D: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: T.162 Chain D: R.15, H.144, F.146 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain D: M.173, D.174, R.189, V.192 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain E: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain E: M.173, D.174, R.189 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain E: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain F: M.173, D.174, R.189 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain F: K.101, R.104, R.140 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain F: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain F: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain E: R.15, R.114, H.144 Chain F: T.162, V.163 Chain G: M.173, D.174, R.189 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain G: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain G: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain H: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain G: T.162 Chain H: R.15, H.144, F.146 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain H: M.173, D.174, R.189, V.192 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain I: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain I: M.173, D.174, R.189 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain I: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain J: M.173, D.174, R.189 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain J: K.101, R.104, R.140 Ligand excluded by PLIP SO4.32: 6 residues within 4Å: Chain J: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain J: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.34: 8 residues within 4Å: Chain I: R.15, R.114, H.144 Chain J: T.162, V.163 Chain K: M.173, D.174, R.189 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Chain K: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain K: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain L: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.38: 4 residues within 4Å: Chain K: T.162 Chain L: R.15, H.144, F.146 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain L: M.173, D.174, R.189, V.192 Ligand excluded by PLIP SO4.40: 5 residues within 4Å: Chain M: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain M: M.173, D.174, R.189 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain M: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain N: M.173, D.174, R.189 Ligand excluded by PLIP SO4.44: 3 residues within 4Å: Chain N: K.101, R.104, R.140 Ligand excluded by PLIP SO4.45: 6 residues within 4Å: Chain N: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.46: 5 residues within 4Å: Chain N: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.47: 8 residues within 4Å: Chain M: R.15, R.114, H.144 Chain N: T.162, V.163 Chain O: M.173, D.174, R.189 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain O: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.49: 5 residues within 4Å: Chain O: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.50: 5 residues within 4Å: Chain P: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain O: T.162 Chain P: R.15, H.144, F.146 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain P: M.173, D.174, R.189, V.192 Ligand excluded by PLIP SO4.53: 5 residues within 4Å: Chain Q: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.54: 3 residues within 4Å: Chain Q: M.173, D.174, R.189 Ligand excluded by PLIP SO4.55: 4 residues within 4Å: Chain Q: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.56: 3 residues within 4Å: Chain R: M.173, D.174, R.189 Ligand excluded by PLIP SO4.57: 3 residues within 4Å: Chain R: K.101, R.104, R.140 Ligand excluded by PLIP SO4.58: 6 residues within 4Å: Chain R: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.59: 5 residues within 4Å: Chain R: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.60: 8 residues within 4Å: Chain Q: R.15, R.114, H.144 Chain R: T.162, V.163 Chain S: M.173, D.174, R.189 Ligand excluded by PLIP SO4.61: 5 residues within 4Å: Chain S: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.62: 5 residues within 4Å: Chain S: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain T: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.64: 4 residues within 4Å: Chain S: T.162 Chain T: R.15, H.144, F.146 Ligand excluded by PLIP SO4.65: 4 residues within 4Å: Chain T: M.173, D.174, R.189, V.192 Ligand excluded by PLIP SO4.66: 5 residues within 4Å: Chain U: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.67: 3 residues within 4Å: Chain U: M.173, D.174, R.189 Ligand excluded by PLIP SO4.68: 4 residues within 4Å: Chain U: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.69: 3 residues within 4Å: Chain V: M.173, D.174, R.189 Ligand excluded by PLIP SO4.70: 3 residues within 4Å: Chain V: K.101, R.104, R.140 Ligand excluded by PLIP SO4.71: 6 residues within 4Å: Chain V: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.72: 5 residues within 4Å: Chain V: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.73: 8 residues within 4Å: Chain U: R.15, R.114, H.144 Chain V: T.162, V.163 Chain W: M.173, D.174, R.189 Ligand excluded by PLIP SO4.74: 5 residues within 4Å: Chain W: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.75: 5 residues within 4Å: Chain W: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.76: 5 residues within 4Å: Chain X: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.77: 4 residues within 4Å: Chain W: T.162 Chain X: R.15, H.144, F.146 Ligand excluded by PLIP SO4.78: 4 residues within 4Å: Chain X: M.173, D.174, R.189, V.192 Ligand excluded by PLIP SO4.79: 5 residues within 4Å: Chain Y: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.80: 3 residues within 4Å: Chain Y: M.173, D.174, R.189 Ligand excluded by PLIP SO4.81: 4 residues within 4Å: Chain Y: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.82: 3 residues within 4Å: Chain Z: M.173, D.174, R.189 Ligand excluded by PLIP SO4.83: 3 residues within 4Å: Chain Z: K.101, R.104, R.140 Ligand excluded by PLIP SO4.84: 6 residues within 4Å: Chain Z: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.85: 5 residues within 4Å: Chain Z: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.86: 8 residues within 4Å: Chain 0: M.173, D.174, R.189 Chain Y: R.15, R.114, H.144 Chain Z: T.162, V.163 Ligand excluded by PLIP SO4.87: 5 residues within 4Å: Chain 0: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.88: 5 residues within 4Å: Chain 0: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.89: 5 residues within 4Å: Chain 1: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.90: 4 residues within 4Å: Chain 0: T.162 Chain 1: R.15, H.144, F.146 Ligand excluded by PLIP SO4.91: 4 residues within 4Å: Chain 1: M.173, D.174, R.189, V.192 Ligand excluded by PLIP SO4.92: 5 residues within 4Å: Chain 2: R.104, S.137, L.138, K.139, R.140 Ligand excluded by PLIP SO4.93: 3 residues within 4Å: Chain 2: M.173, D.174, R.189 Ligand excluded by PLIP SO4.94: 4 residues within 4Å: Chain 2: G.9, L.10, M.46, S.110 Ligand excluded by PLIP SO4.95: 3 residues within 4Å: Chain 3: M.173, D.174, R.189 Ligand excluded by PLIP SO4.96: 3 residues within 4Å: Chain 3: K.101, R.104, R.140 Ligand excluded by PLIP SO4.97: 6 residues within 4Å: Chain 3: Y.93, H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.98: 5 residues within 4Å: Chain 3: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.99: 8 residues within 4Å: Chain 2: R.15, R.114, H.144 Chain 3: T.162, V.163 Chain 4: M.173, D.174, R.189 Ligand excluded by PLIP SO4.100: 5 residues within 4Å: Chain 4: H.97, R.104, L.138, K.139, R.140 Ligand excluded by PLIP SO4.101: 5 residues within 4Å: Chain 4: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.102: 5 residues within 4Å: Chain 5: G.9, L.10, K.45, M.46, S.110 Ligand excluded by PLIP SO4.103: 4 residues within 4Å: Chain 4: T.162 Chain 5: R.15, H.144, F.146 Ligand excluded by PLIP SO4.104: 4 residues within 4Å: Chain 5: M.173, D.174, R.189, V.192 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zuo, Y. et al., Crystal Structure of RNase T, an Exoribonuclease Involved in tRNA Maturation and End Turnover. Structure (2007)

Release Date

2007-04-24

Peptides

Ribonuclease T: ABCDEFGHIJKLMNOPQRSTUVWXYZ012345

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

M
A

N
B

O
C

P
D

Q
A

R
B

S
C

T
D

U
A

V
B

W
C

X
D

Y
A

Z
B

0
C

1
D

2
A

3
B

4
C

5
D

Ribonuclease T

Related Entries With Identical Sequence