SMTL ID : 2ix3.1

Structure of yeast Elongation Factor 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.49, H.401, E.402, H.956 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.402 Salt bridges: A:H.49, A:H.401, A:H.956 SO4.2: 3 residues within 4Å: Chain A: S.550, W.553, N.583 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.550, A:N.583 SO4.3: 4 residues within 4Å: Chain A: K.453, Q.455, K.622, R.624 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.453, A:Q.455 Salt bridges: A:K.622, A:R.624 SO4.4: 4 residues within 4Å: Chain A: V.588, N.589, N.592 Chain B: R.877 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.877 Hydrogen bonds: A:N.589, A:N.592 SO4.5: 6 residues within 4Å: Chain A: P.469, G.471, C.472, G.473, K.474, S.475 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:P.469, A:G.471, A:C.472, A:G.473, A:K.474, A:S.475 Salt bridges: A:K.474 SO4.6: 6 residues within 4Å: Chain A: Y.660, E.662, G.663, K.665 Chain B: T.524, E.526 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.660, A:G.663 Salt bridges: A:K.665 SO4.7: 4 residues within 4Å: Chain B: H.49, H.401, E.402, H.956 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.402 Salt bridges: B:H.49, B:H.401, B:H.956 SO4.8: 5 residues within 4Å: Chain B: T.265, T.305, I.306, A.307, D.308 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.307, B:D.308 SO4.9: 3 residues within 4Å: Chain B: S.550, W.553, N.583 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.550, B:N.583 SO4.10: 6 residues within 4Å: Chain B: P.469, G.471, C.472, G.473, K.474, S.475 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.471, B:G.473, B:K.474, B:S.475 Salt bridges: B:K.474 SO4.11: 7 residues within 4Å: Chain A: T.524, E.526 Chain B: Y.660, E.662, G.663, V.664, K.665 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.660, B:E.662, B:G.663, B:V.664, A:T.524

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andersen, C.B.F. et al., Structure of Eef3 and the Mechanism of Transfer RNA Release from the E-Site. Nature (2006)

Release Date

2006-08-08

Peptides

ELONGATION FACTOR 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ELONGATION FACTOR 3

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