SMTL ID : 2ixd.1

Crystal structure of the putative deacetylase BC1534 from Bacillus cereus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.12, D.15, H.113 Ligands: ACT.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.12, A:D.15, A:D.15, A:H.113, ACT.2 ZN.3: 4 residues within 4Å: Chain B: H.12, D.15, H.113 Ligands: ACT.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:H.12, B:D.15, B:D.15, B:H.113, ACT.4 ZN.5: 4 residues within 4Å: Chain C: H.12, D.15, H.113 Ligands: ACT.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Ligand interactions Metal complexes: C:H.12, C:D.15, C:D.15, C:H.113, ACT.6 ZN.7: 4 residues within 4Å: Chain D: H.12, D.15, H.113 Ligands: ACT.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: D:H.12, D:D.15, D:D.15, D:H.113, ACT.8 ZN.9: 4 residues within 4Å: Chain E: H.12, D.15, H.113 Ligands: ACT.10 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Ligand interactions Metal complexes: E:H.12, E:D.15, E:D.15, E:H.113, ACT.10 ZN.11: 4 residues within 4Å: Chain F: H.12, D.15, H.113 Ligands: ACT.12 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Ligand interactions Metal complexes: F:H.12, F:D.15, F:D.15, F:H.113, ACT.12

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 9 residues within 4Å: Chain A: H.12, D.14, D.15, I.18, R.53, H.110, H.113, L.190 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.18, A:L.190 Hydrogen bonds: A:R.53 Water bridges: A:H.110 Salt bridges: A:H.12, A:H.110, A:H.113 ACT.4: 9 residues within 4Å: Chain B: H.12, D.14, D.15, I.18, R.53, H.110, H.113, L.190 Ligands: ZN.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.18, B:L.190 Hydrogen bonds: B:D.14, B:R.53 Salt bridges: B:H.12, B:H.110, B:H.113 ACT.6: 9 residues within 4Å: Chain C: H.12, D.14, D.15, I.18, R.53, H.110, H.113, L.190 Ligands: ZN.5 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:I.18, C:L.190 Hydrogen bonds: C:R.53 Water bridges: C:H.110 Salt bridges: C:H.12, C:H.110, C:H.113 ACT.8: 9 residues within 4Å: Chain D: H.12, D.14, D.15, I.18, R.53, H.110, H.113, L.190 Ligands: ZN.7 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:I.18, D:L.190 Hydrogen bonds: D:D.14, D:R.53 Salt bridges: D:H.12, D:H.110, D:H.113 ACT.10: 9 residues within 4Å: Chain E: H.12, D.14, D.15, I.18, R.53, H.110, H.113, L.190 Ligands: ZN.9 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:I.18, E:L.190 Hydrogen bonds: E:R.53 Water bridges: E:H.110 Salt bridges: E:H.12, E:H.110, E:H.113 ACT.12: 9 residues within 4Å: Chain F: H.12, D.14, D.15, I.18, R.53, H.110, H.113, L.190 Ligands: ZN.11 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:I.18, F:L.190 Hydrogen bonds: F:D.14, F:R.53 Salt bridges: F:H.12, F:H.110, F:H.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fadouloglou, V.E. et al., Crystal Structure of the Bczbp, a Zinc-Binding Protein from Bacillus Cereus. FEBS J. (2007)

Release Date

2007-07-17

Peptides

LMBE-RELATED PROTEIN: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

LMBE-RELATED PROTEIN